Array 1 13157-13543 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQE01000002.1 Moraxella caviae strain NCTC10293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13157 28 100.0 32 ............................ TTCGAATACACAAGATTGTCAAAATTATTGAC 13217 28 100.0 32 ............................ ACAACGCTGAACATTCGCCCAATGTGCTTTTT 13277 28 100.0 32 ............................ TTCGAATACACAAGATTGTCAAAATTATTGAC 13337 28 100.0 32 ............................ ACAACGCTGAACATTCGCCCAATGTGCTTTTT 13397 28 100.0 32 ............................ AACCACAGATGAAACCATCAAACACAATATTT 13457 28 100.0 32 ............................ GTATTTGTCGCTTAAGTGTTTGCCAAAGTCAA 13517 27 92.9 0 .......................-...T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 ATTATCAGCCGCATAGGCTGCTTAGAAA # Left flank : TACATTGGTCTAATTTTATGTCAAGTGAAAAAACTCAAGTAAGGCGTGGCAGACACGTTGTTTTTAATTTGCATGTTCATTTGGTCTTTGTTACTAAATACAGGCGAGAGGTGTTTACCAAAGAGATTTTAGATGAGCTAAAAATTATCTTTCATGGCGTATGCTTGGATTTTGAAAGTGAGCTTGTAGAGTTTGATGGTGAAGAAGACCACGTGCATCTGTTGGTACACTATCCGCCAAAGGTAAGCATATCCAAACTTGTAAACAGTTTAAAAGGGGTATCTAGTCGTAGAATTCGGCAAAAATGCTATCCGAGCATCACCAAAAAACTTTGGGGTGGTGCATTGTGGTCACCAAGCTATTTTGCTGGGTCTTGTGGTGGAGCACCCATTGAAATTATCAGACAATACATTGAACAACAAAACACACCACATTAAGGCTTGCACACCGCCTTATATCCACGCCCTAAAGGACGTGGTTTTACGGCGGGGTGGATAACA # Right flank : TACAGTGCTACGAGCATTATTCGCTTAAAAAAATTATACTATTAAAAGGGATGGCAATAGTGATATACTGTACAAAATTTAGTCAAAAAGGATTTGATTATGTGTGATGCCGATAATGAACTGCAAGAGTGGGATAAGCTTTGTAATGCTAGACAGGTTGAATGGCTATTGTCGCACTTACGCAAAGCACGCTATTTATACGATATCCAAGATGAAGATTATAGCTTGGGTGCAACAATGCATTTTGTCGTTGATTGTGTCAAAGTATTCATTGAAGAACCAACCCCACTGCATTATTTATCACTGATACAAACCGAAAATATGATGTTAGGGGCGTTGATTGCCAAAGGTGCTAATTTTGCGCCTGTTGGTTGGGGGCGACTGTGGGAAGCTAGAAATCATCTGCCATCACTAAGAGATGCTTTAGAAGTGGCGGTAGCTGAAAACGATTACTTGTTTGACTTTAGATTTTTTTCAGATTCTGACTTTGACCCTACCTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCAGCCGCATAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1186053-1188770 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQE01000004.1 Moraxella caviae strain NCTC10293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================================== ================== 1186053 32 84.4 34 .....................A...C..C.CG CTTTTTCATTTTTATTTCGTATAATGCCTCTCAT A [1186076] 1186120 32 84.4 34 .....................A...C..C.CG TGAGCTGATTGGCAATCAACTGGTAGAAGCCAAC A [1186143] 1186187 32 84.4 32 .....................A...C..C.CT CTCACCCAATCGAATACACGCTTCCTGAAGGC A [1186210] 1186252 32 87.5 34 .....................A...C..C.C. TTTAAGTTTTCTTGTGTAAGCGGTTGCAAAAATT A [1186275] 1186319 32 84.4 32 .....................A...C..C.CT GTGTCTTGGGTAAATTTTTCATAGGTGGCAAG A [1186342] 1186384 32 90.6 24 .....................A...C.....T CGTCAAATCGCCATCATTGACAAA A,C,C [1186407,1186413,1186415] Deletion [1186440] 1186443 32 100.0 34 ................................ AAACAGTCGCCAACCTTGACGACCTGCAACATAG 1186509 32 100.0 33 ................................ TTGGCGACTGTTGCGCCGACAACCTGAAAAAAC 1186574 32 100.0 35 ................................ ATCTTCAAAAAGTCCGTCTGCCACAAACCATAGGC 1186641 32 100.0 33 ................................ AACTACTCTGGCACACGCGCAAGAGACCGCCAC 1186706 32 100.0 34 ................................ AAAATGCCCAATCTTAGCACTCAAAGCCGACAAC 1186772 32 100.0 35 ................................ CGTGTGATGAGCATCAGCCAAAATGACGATGCCAC 1186839 32 100.0 34 ................................ GGATTATTATCCGCCCACAAAGTCTGCGTGATGC 1186905 32 100.0 33 ................................ AACCGTAACAGGGCGGCTAAAATGCCAAACAGC 1186970 32 100.0 36 ................................ TAACAGCAGTGGAGTACCATACGGTTCTTCACCAAC 1187038 32 100.0 34 ................................ ACTCCCATGACTGAAAAGCTACGACCAGCAATTT 1187104 32 100.0 32 ................................ CGCTGTCAATCTGATAATTGCCCACTTGCACC 1187168 32 100.0 32 ................................ GGCATGATGATTGAATGGGCGTTTGCCAAAGG 1187232 32 100.0 34 ................................ ACGCTGGCACGACTGCGCCTACTGCCAATCTAAC 1187298 32 100.0 34 ................................ ACCTGCGCCTGCATTGGTTTGTTTTGTGCGTTTT 1187364 32 100.0 33 ................................ CTACAAATCGCATTGATGTCGCCAATCAGTACA 1187429 32 100.0 35 ................................ ACGCAGTGCGCCCAATGAGTTTTTGCGCACTTGTT 1187496 32 100.0 33 ................................ AATTATTCGGAAAGTTTTGGGGCACGTAACAAT 1187561 32 100.0 33 ................................ ACGATATATCATTTAATCGCCAAGTGTTCGAAT 1187626 32 100.0 36 ................................ TCACGTCCTACACCGTGCAAGTTGTTGTTAGTGTTC 1187694 32 100.0 34 ................................ CTTATGCTGATGGGCATTTTATTAGCGATATTCA 1187760 32 100.0 34 ................................ TATGCAAACTTTCAGCAGTTTCAGTCATAAAAGG 1187826 32 100.0 33 ................................ CTCGCAATCCCTTGATATACAAGGCTTTGACGA 1187891 32 100.0 35 ................................ AAATATCTGTACCGAGCAGGCGCAAAAGATGACAA 1187958 32 100.0 33 ................................ GTAAACGGTTTAGCACGTCCACCGCCGAACCTA 1188023 32 100.0 32 ................................ GATGTACCGTCTGAACCTGCACCGTTAAACGT 1188087 32 96.9 33 ...........T.................... ACCTGCGCCACAGATGATTGAAGTTTTGGATTA 1188152 32 100.0 26 ................................ GGATTATATACAGTATGGCGGCACCT Deletion [1188210] 1188210 31 84.4 32 G.....T....-A........A.......... GTTTTTTCACAGCCCTGCAACGGGACAATATG T,T [1188214,1188218] 1188275 32 96.9 102 G............................... GCAACCGAGATTACAGTATAATATACACATTAAATCTCTCACGCCCTTACAAGTGAAAGATTTCGAGCACGGTGATACTTATAGCGATGGTATTGCCACCAT 1188409 32 90.6 34 .....TG.T....................... CAATCTTAATCAGTGTACAGATTGGCTGTTGTAT 1188475 32 96.9 34 ...........T.................... AATCATAATGCTAGCGCCAATATTTGGACGCACA 1188541 32 100.0 34 ................................ CTAGCGGTTTTTGATGGTCGTTATCTGCGCCAAT 1188607 32 96.9 34 .............A.................. GCCAGCTGCCATCGTCTTTGCACCATTCCACCAA 1188673 32 93.8 34 ...........TA................... AATCATAATGCTAGCGCCAATATTTGGACGCACA 1188739 32 93.8 0 ...........................T...A | ========== ====== ====== ====== ================================ ====================================================================================================== ================== 41 32 96.7 35 TCTCACACCTTCGGGTGTGAGTGAATTGAAAC # Left flank : TACGAACCTTATCAATATGCCAGATAAATGTCGGCTTCCAATAAATGCTACGACACACGCCTTTTAGGGCTTCATAGGTGGGAACATGGTAAGTGGTTTTCTCGCCACCAATTTTAGTGACAGGGTCGGTAAACAGTGCATTGCGCCCTGTTAGCAGGAATGTCATAGTGTTGGCTGGCAATGACATGGCGATCCTTATTACCCTAAAACAATTCTAATGACGGCAAAACAAGATTTTCAAACCTATGCTTTTTGGATAAAAATACTGTATAATTCACAAAAAGTCAATACTTACTTTGCAAAAAAATAAGTGCGAACCTTAAGCACACATAAAATCCCTGGCAGGTTCGCAGAATTATTTAACAACTTGATTTTAAACAGGTTTGGTTGTAGAATCATAACCTAATGCTGTGCAATGCAGCATTAAAAAGTTTTGCTACCGCCCATTCGCAGAATTGGTAAATTTTTATCAATAAAATGAATGGGTTAAGTAGCAGGCT # Right flank : AACTAAGGCTGTATTAGAATAACAACCATACTATGCTAGCACAGCCCTATAAAAAATTGTGCAGATTTTCCCAAGTTTAACAGTCTGCAACCCCTATTCTTGCTGAGTGATTGTATTCGTTTAACGCCAGTTTACCATCCATAAACTTGTCCTAGTTACCTATATTGGCTCATTTAAGCACACTGCAAAGGCTGCAATCAAGAATACAAACCACAAATCAAGACACCTACTGCATCGCACAGCATACTCAACAGCCTTACATTATCAATAGAAGCTTTTAAATAATGGTGTTTTGATTGACAAACTTATCACAACAGACTTCTAACATTTCATTCTTTAAATACTTAGCATTGCTCAAATTTTGGAATAAAAAATCTTTATAAAGCATATCACAAACAAAAATAGCCCGAAGTATGTGTATCGGGCTATTTTTTATATCACTTGCTGATATAAATTTAGGGGCTGTCCTAGATAACTAGAACAAATACTCCCTAACTAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCACACCTTCGGGTGTGAGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //