Array 1 95709-94642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUTJ010000004.1 Escherichia coli strain 6360 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95708 29 100.0 32 ............................. CGCGCCCGGCTGGAATGAAGCTGGGCGCTCTA 95647 29 96.6 32 .............T............... CGTCGCATTCCTGCGCTAATGAGCATTACGCC 95586 29 96.6 32 C............................ GCACCGCAATTTCCTCGTGACGGCCTGCGCCT 95525 29 100.0 32 ............................. GCACTTTTTGCACATTAAATCATAGCTATTGC 95464 29 100.0 32 ............................. TCGTCCATCACAACGCGTAAAAACGGCGTTGT 95403 29 100.0 32 ............................. GCGGGGTCAGGGAAAAAAGAATGGCGTTGCCG 95342 29 100.0 32 ............................. TACATGACCTGTTAACCGCGTACCAGAATCAG 95281 29 96.6 32 ............................T GTGGGATATATCCGATCACTTCTTTTGCAGTC 95220 29 100.0 32 ............................. GGCCACCGGGAGTTGTCCAGTACGGAGGTTTA 95159 29 100.0 32 ............................. GTTTCTGCAACACGATCTGACGCATCGAAAGT 95098 29 100.0 32 ............................. GCACTCTGCTGCCTTTTGTAATAGTCGCGCGC 95037 29 100.0 32 ............................. ATGATGCAACCGTCGCAGGACGACCTGCGCAC 94976 29 100.0 33 ............................. CCGATTTTATGCATGGCGGTTGATAGTGGCGGC 94914 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 94853 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 94792 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 94731 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94670 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122538-121411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUTJ010000004.1 Escherichia coli strain 6360 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122537 29 100.0 32 ............................. CCAGTCGAAGATCTGGACGCGTGGGGAAAAGC 122476 29 100.0 32 ............................. TCCTTGCGTAACCGCTTATTCTTGATAATTAA 122415 29 100.0 32 ............................. AAACTCCCTGGTGTGCTGCGTTCACCGGAGCT 122354 29 96.6 32 ....................A........ ATATCCAGTCTGCTATTTCTGGACTATCCGCA 122293 29 96.6 32 ............................T GATCGACTTATCATGTAGGACACCATGTACCG 122232 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 122171 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 122110 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 122049 29 100.0 32 ............................. CTGGATATCTCCCGCCCGCGGCAACTGTAGTA 121988 29 100.0 32 ............................. GGCTTTTTTGAGAAAGATTTACGCGGTCGAGT 121927 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 121866 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 121805 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 121744 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 121683 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 121622 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 121561 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 121500 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 121439 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //