Array 1 13732-12056 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQR01000108.1 Escherichia coli strain JML136 sequence108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13731 29 100.0 32 ............................. AAATCGACGCGCTGGCCCGGTCCGCGCAGTCA 13670 29 100.0 32 ............................. GTATTTACAATGGTCTTATCTTAGGAAAAATC 13609 29 100.0 32 ............................. TTACGATCTCCGCGATAACTAACGGTGTTGAG 13548 29 100.0 32 ............................. GCTGGCAGGGCGGCAATTGTTTTCTCCAGTAC 13487 29 100.0 32 ............................. TGAAAAATTTGACGGAATCATGACGCTGGTCC 13426 29 100.0 32 ............................. AGCTGGAATATGGTTTCAGCCCGACAAAAACG 13365 29 100.0 32 ............................. CCTCGTTTATCGAGGTACTTACGCACATGTTC 13304 29 100.0 32 ............................. AAAAAACAGTGGTACTACCGCCCCGCCGAACA 13243 29 100.0 32 ............................. GTGTGTTTTTTGCGCCACGGCGAACGGATTCA 13182 29 96.6 32 ............................C CGCAAGGTAAAGGCTGGTTAGAGGGGGTGAGC 13121 29 100.0 32 ............................. GCTCAGGCTGATGATGATGCGGCGTTTATTGA 13060 29 100.0 32 ............................. TCGCCAGTGACATGGAAGCGCGCGACGAATCG 12999 29 100.0 32 ............................. ATTTGGTGTATCCCACACAGCTATTAATAACA 12938 29 100.0 32 ............................. ATGCCGACATGACGGATGAACAGCTTTATGAC 12877 29 100.0 32 ............................. ACCTGGGAGAAAAAATACGGTCAGGAAATTGA 12816 29 100.0 32 ............................. ACCTGGGAGAAAAAATACGGTCAGGAAATTGA 12755 29 100.0 32 ............................. GTCGCGCGGCTGGCGTAGTGTGGGGTGCTGGC 12694 29 100.0 32 ............................. CGGAACATCGTATATCTATCTACGCGAGAACC 12633 29 100.0 32 ............................. ACGATACCGATATTTGGGCGGAGGCGATAGGG 12572 29 100.0 32 ............................. GAGGGCCTGGTTTTAACGTGGGCGCGCAACGC 12511 29 100.0 32 ............................. CCAGAACTCTGCGGCGATGTCGAGCGCCTCAC 12450 29 100.0 32 ............................. GAGCATTGATGGCAACTGGTCGTAAAAACAAT 12389 29 100.0 32 ............................. AGGCTGGCGGTCTGATGATGATCACTATTGAG 12328 29 100.0 32 ............................. GAGAGTTTGGACGGCATCCCTGTTGGTGCGTA 12267 29 96.6 32 ............T................ GGAGTTCAGACATAGGTGGAATGATGGACTAC 12206 29 96.6 32 ............T................ CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 12145 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCAAGCCTGACGCTG 12084 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTTCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGTTCCCATTTTCAAACCCATTAAGATGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTGCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGGCTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //