Array 1 1399285-1398225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134349.1 Bifidobacterium dentium strain NCTC11816 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1399284 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 1399220 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 1399156 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 1399092 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 1399028 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 1398964 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 1398900 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 1398836 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 1398772 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 1398708 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 1398644 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 1398580 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 1398516 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 1398452 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 1398388 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 1398324 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 1398260 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 17 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1836770-1831393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134349.1 Bifidobacterium dentium strain NCTC11816 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1836769 33 100.0 33 ................................. AAGTCGTTGTTCATGTGGACACGCCAATATCCG 1836703 33 100.0 35 ................................. GCAGAAGGTCACGATGGATGATGCAACGTTTTACA 1836635 33 100.0 33 ................................. CTTAACCGTACTCCGGCCGCGGCTGGCGGACAG 1836569 33 100.0 33 ................................. GAGAAAAGGACTAAACAATGGCTACCGTATACA 1836503 33 100.0 33 ................................. ATGACACTTCCACCGCCCGTACCATGACGGGAA 1836437 33 100.0 34 ................................. CTGCAAATGACGAACGTGCTGTCGGATGAAGCGT 1836370 33 100.0 33 ................................. GTCCTCGACCGCGACCATGCCCGAATCGTTTGG 1836304 33 100.0 34 ................................. ATTTATTTGCGCCGCACCGACGTGGAACAGCACC 1836237 33 100.0 35 ................................. AAGGATTGAGGTGAGCTCGATGAGGCAAATGCCGC 1836169 33 100.0 33 ................................. TCGGGGAAGCGGTACGAGCCACGGTGCGCGTGG 1836103 33 100.0 33 ................................. CATTCGATGCCGATAGGGTGCCCTGAGTCTGCC 1836037 33 100.0 34 ................................. ATAAAGTCCCTGTAAGTGATGGAGGACACGTTAG 1835970 33 100.0 33 ................................. TCGGAGGAGCTGCTCGTAGTAGTCTTCGAATCC 1835904 33 100.0 34 ................................. TCTCTGCAGCACGCGCATATTCGTGGATCAGCCG 1835837 33 100.0 35 ................................. AACGACGGCAGCTCGCACGTGGAATGGATCACCGA 1835769 33 100.0 34 ................................. TTGTCCGGCGACATCGGCGGCGGCATCAGCGCCA 1835702 33 100.0 34 ................................. ATCCAGACATGCGATTATGTCAATGCCCACACCA 1835635 33 100.0 34 ................................. CGCTTTGAATGGCAGGTTCGGGATGCCGAGTCCG 1835568 33 100.0 34 ................................. CAAGTCATCCAGCGTTTTGCCAATACGCTCGAAT 1835501 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATCACCCCTAATCCGT 1835434 33 100.0 32 ................................. CAGCTCGGCGACGCGGACGGCCAGATGCTCAT 1835369 33 100.0 34 ................................. CCCGATTGGGAGATGAGGATCCGTGGCCGCGTCA 1835302 33 100.0 34 ................................. TCCGGCCCCCAGCCGAGCTCTTCCCACGCCATTT 1835235 33 100.0 34 ................................. TCACCCCGGTAGGCCCAGTCGATGGGCAGTTCCC 1835168 33 97.0 35 .............G................... ACTGCGACGGCTTGCGCTTGCATGCACAGTAACCC 1835100 33 100.0 34 ................................. GATTGCCTTGTGTTGGCATTCGTCGTTGGATGAT 1835033 33 100.0 34 ................................. CATTAAGAGTGAAGTTGCCAAGACGTATGCGACC 1834966 33 100.0 34 ................................. GACATGCTGGGCCATGATATAACCGCCTTAAAAA 1834899 33 100.0 34 ................................. ACATCCACGAGCAACTGGCGCGTCGTATATAAAA 1834832 33 100.0 35 ................................. TGGTCGGCGGTCATCATCAGTCTTATCGGCGGTGG 1834764 33 100.0 33 ................................. GGCGTGTACGCCGTCAGATAGGCCGTCGCACCC 1834698 33 100.0 33 ................................. ACAAACCCATTGCCGAAACTGCTCAACACGACA 1834632 33 100.0 35 ................................. ATGATTTGGAGCCTAAAAAATCAAAAGTATTGTAC 1834564 33 100.0 33 ................................. GATGTGAAATTCGACGTGGACCGGACCAGCTTC 1834498 33 100.0 33 ................................. GCAACCTTACGCGCCGCCATCATGTGCAGTCGA 1834432 33 100.0 34 ................................. GCCTCACGCGAACGAATAGCATCGGCGGAGGCCG 1834365 33 100.0 33 ................................. ACCAAATACGTGTTTAAGGTGCAAGATGATTGC 1834299 33 100.0 34 ................................. CCGTCACCGATGCGGAAGTGGAAGCCTCCGCCAA 1834232 33 100.0 34 ................................. TTCTTTCTTATTACTACTACTCCTACTACTACTA 1834165 33 100.0 34 ................................. ACCATGCGTTTGCAGTCCTGCTTGCGCTTGTAGA 1834098 33 100.0 33 ................................. AAATGCCGGTATCTGCCCGGGATATGGAAGTTG 1834032 33 100.0 34 ................................. CTGGTGCCGTCAATCGGATTGACCGGCGAATTGG 1833965 33 100.0 35 ................................. ACCTTATCGTAGGCTACGGGGTCGTTGATCAGCCA 1833897 33 100.0 33 ................................. CTGCTGGCCATATGCCTGGAATCGCGTGGGTTG 1833831 33 100.0 34 ................................. CTCGATTTCGGTTTGCATGTGGGTCAGGATCCGG 1833764 33 100.0 34 ................................. CTCAACAGGCTGACCATGGCGTCGGTGGTCGCGT 1833697 33 100.0 33 ................................. TCATACCGTGATACGCTTACCGTACTCGGCTAC 1833631 33 100.0 33 ................................. GTTGAGCGTCCGTAACGCCATGGTCGCCTCCCC 1833565 33 100.0 36 ................................. ACTGCTTGCGGTGGCTGTCGAGTCTTGCGTGGTGGC 1833496 33 100.0 34 ................................. GCCTTGACCTCACGCGACATGAAATCGGCGTAGG 1833429 33 100.0 33 ................................. ACCAACGAACAGGTGAGCGCGACCCTGTTCGCC 1833363 33 100.0 34 ................................. CAGGATGGATGTCAATTCGATGAGGCAGATGCCG 1833296 33 100.0 34 ................................. CAACCATTTGCGGAACGTTGGTCATATTATCCCC 1833229 33 100.0 34 ................................. TTATGAAAGGTGTGAACATGAGCAGACGGAACAA 1833162 33 100.0 34 ................................. GGGTGCGGCGAATGCGATCGGTGCGGCCGCCACC 1833095 33 100.0 34 ................................. CTATCCGCAAATCGGCTCGAAAGAGTGCGTACCC 1833028 33 100.0 33 ................................. GCGCATGGTGCGGCCCAGGTAAAAGACGAACAT 1832962 33 100.0 34 ................................. GTGGACGGCTCGGGCGCTGATGTCCACAAGCTGG 1832895 33 100.0 33 ................................. TGGTTGGTCTTGCGTCTGCGTCGAGTCCACGTC 1832829 33 100.0 33 ................................. CTCCGGACAGGTCGAACTACGGAGATACATTTC 1832763 33 100.0 35 ................................. AATAACTGATGCCGGACAGTGGCTCGTTGTCGCCG 1832695 33 100.0 35 ................................. ATTGGCCAGCACGAACCTTTCGAACCAGCAGACCA 1832627 33 100.0 35 ................................. AAGCCAAAATAGTCGGCAAACCACCATACGGTTAT 1832559 33 100.0 34 ................................. TCCGTCGAGAGTGTTCCGTGATCAGGTCGGCGTG 1832492 33 100.0 34 ................................. ATGGCAAAGTCCCTGCATGCGCGTCTCGTGGCCT 1832425 33 100.0 33 ................................. ACGTAATCGCACGTCTGGACGAAATAATACCAA 1832359 33 100.0 33 ................................. GCTTTCGCGCCGACGGTCAAGATCACCCGCAAA 1832293 33 100.0 33 ................................. TACACGGCAAGCGTCGGCATCCGCGGCGTATCA 1832227 33 100.0 33 ................................. ACGTGATGACGCAGGTCGCAGTCGATGACATGC 1832161 33 100.0 33 ................................. GACAAGGACGGGTATTCGCCGCCATCAGGCGGC 1832095 33 100.0 34 ................................. CTCACCGGCGTCAACGGCACGGGGAGCAAGACAT 1832028 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 1831962 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 1831896 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 1831828 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 1831760 33 90.9 35 ............................TG..A TATGCACGCGCACACCGACATCCGCAGGGAGCAAT 1831692 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 1831626 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 1831559 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 1831491 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 1831424 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 81 33 99.6 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGCCATGGCGGGACGATGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //