Array 1 224304-226834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000002.1 Clostridioides difficile strain BfR-CL00262 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 224304 29 100.0 37 ............................. TATATAGGTTCAGTTTCATAGAATTACTTATACATAG 224370 29 100.0 38 ............................. TCAGATAGACAAAAGGTTTATGAATATATAATTAATAG 224437 29 100.0 37 ............................. CAAACATAATAGTGCAAGTATAAAGAAAAATAAATCT 224503 29 100.0 37 ............................. AAAAATTTTATACACCGTTCGCTATTTCTTTAACTAC 224569 29 100.0 37 ............................. TAGATTTTTTCACAAATAAACTTAACGAGTACAATGA 224635 29 100.0 37 ............................. GTACCCCCAAAACAGGAGCCGGAACAGGTAATCAACC 224701 29 100.0 37 ............................. TCTAAAATCTTAACTTTTTCTTTTTCTAAATCTTTGT 224767 29 100.0 36 ............................. CGAGTTGGCCAAGCATTTTTCGCAGATTTTAATATG 224832 29 100.0 37 ............................. TCTTCAACAGTTGCGTTACCATCTCCTACACGTACAG 224898 29 100.0 36 ............................. AGGATATTTCAATCAAAAATTGTTTTTTCAAATATC 224963 29 100.0 36 ............................. TCGGCTTTAAGTGGTTACTAACGCATTCTCCATATG 225028 29 100.0 36 ............................. AAAAAGATTTCGAATCTATAGACTTAACAAAAACTA 225093 29 100.0 35 ............................. TATAAAAAGTCACTATTTCAGTCTCTTTACTCTGC 225157 29 100.0 36 ............................. GGAGTTCCACTATAAAAATATATCATAAAATAACCT 225222 29 100.0 37 ............................. AATTTTAGACAAGTGCAAGGAGAAAATGTAAATTATA 225288 29 100.0 39 ............................. TCGTGAAATAACAATTATCGGGAATATGAGAAGTTTCTG 225356 29 100.0 39 ............................. ACTAAACACTTGGTATTAGCCAACTGCATATACATATAT 225424 29 100.0 36 ............................. ACTTTCTATTTCATTTGCCTTGTCTCGTAGTGCTTG 225489 29 100.0 38 ............................. TTGCTACAACGATATAGATTAAATTTAGGAGGATACAT 225556 29 100.0 37 ............................. TGTTTTGTTTCCTCGTCTTGTTCTTCTATGTTTTCTA 225622 29 100.0 36 ............................. CAAATTCATAGCTCCATCACCATGTTTGATTTTTGT 225687 29 100.0 38 ............................. GGAAATATAATTCAGACTGTTGCTGTTCCAAAAAATAA 225754 29 100.0 37 ............................. CAAGTTCAAACACTAACATTGACGCACTTATGGAAGC 225820 29 100.0 38 ............................. AAAGTTGAAAGCCACATCATAGTCACGTATATTTTCTT 225887 29 100.0 36 ............................. TTGAGAGCCTTTACTAAACATAATATTTGTAATATT 225952 29 100.0 37 ............................. AATAATTCATTAGGAGAACACTTAAGAGCCATGCAAA 226018 29 100.0 37 ............................. TGTACAGTATGAAAAAGAGGCTCTAGGTTTAGTTTTT 226084 29 100.0 38 ............................. GTATAATTTTTAAAGAGGACATACAAACCCTCTTAAGG 226151 29 100.0 36 ............................. TATAAATAAATAAACAGAAACCAAAATCAAATCTTT 226216 29 100.0 35 ............................. ATAACATAAAGAGCAGCAACTAAAATTAGCAACTG 226280 29 100.0 36 ............................. GCCAAACCAACTATCAAATTGAAAAGTTCAGCAGAA 226345 29 100.0 36 ............................. TATCTTTTTGTTCATTTTTTATTCCTTCTGAATTGT 226410 29 100.0 37 ............................. CTGTTATAGACAAAAACACTCTTACAATAGAAAAACT 226476 29 100.0 38 ............................. TTCATAAATTAATCTATTACATTGTATCCTTTCAAAAG 226543 29 100.0 37 ............................. GACGTTTTTGATGACAAGCAAAATTCTGTAAAATATG 226609 29 100.0 35 ............................. AGCGTTAACATTAAATAAATGGGTATAGCTAAATC 226673 29 100.0 37 ............................. CTTGGTAAATCATAAGGAGGATTATTTTCTCCAACGA 226739 29 100.0 38 ............................. TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 226806 29 89.7 0 ...................T..GA..... | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGGAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATAATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTATTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATACTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAACAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACAATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 277722-277945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000002.1 Clostridioides difficile strain BfR-CL00262 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 277722 29 100.0 35 ............................. TTTTCTAACTTCATTTTTTAAGTCCTCAATTCTTG 277786 29 100.0 37 ............................. TTACACAATGTTTCTAAATTAATCATCTTTAAATCCC 277852 29 100.0 36 ............................. ATTACTCAACTTGTAAGTCAATAAAATAAGCCCAAA 277917 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TTAAGAGTAAAGTTATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGCATTGAGAATATATAATAAGTATTATCAATTGCACTATTGCGCGTTCACTGTAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAAAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4125-4746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000019.1 Clostridioides difficile strain BfR-CL00262 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4125 29 100.0 37 ............................. CCTATAACTTTATTTTTTAAAGTAACATTTTTTAAAA 4191 29 100.0 36 ............................. AAGCAATAGGAGCAACAGCAGAGATTGCACTTAACG 4256 29 100.0 36 ............................. CAAGCTACAATATTAAGCGCAATTAAAAGAGGTGCT 4321 29 100.0 38 ............................. TTGGTAGGAGCATTTGAAACTGCTGAGCATAATTACAA 4388 29 100.0 37 ............................. TCTAGCCACTAAGGAAAAGCTGACTATTAAGAAAATA 4454 29 100.0 36 ............................. ATAGCAACTTTAGTCAAACTCTTACTATCATTTAAC 4519 29 100.0 37 ............................. TATTGTGCAAAGCTTGAGTTTTATGAGGATGAGATTG 4585 29 100.0 37 ............................. ACATAAATTGCTGCCATACTACTTCCTCCTTCAAATT 4651 29 100.0 38 ............................. ATTAAACCACAAGACTGGAAAGCACCATATATGGACAT 4718 29 79.3 0 ................G....GAAA..C. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 97.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTAAAATCTAAGATGTTGAGGGTGCGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTACCTTATATTGGAAATTTGTATAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTACGCTATGGGATTATTCAAAAAGAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTCTTATGTGATGAATGCTTTGAAAAATGCAGAGGTGAAATAGCTGTTCTTGGCAAAGGACTAAAAAAACTGACAAGTAAGGAAGTTATAAATGCTGTAGAGCTATGTAAAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGACATCCTTTATTTAATAGAGAAGAAATGATTTGTCTTTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTGGAACAGGACCTATACCTATAGTAGATGTATTTGAAGTTTCATATTCAGATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 7485-8237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000019.1 Clostridioides difficile strain BfR-CL00262 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7485 29 100.0 37 ............................. CTACTAGAAAAAATAACAACTCCACATTTGCCACTTC 7551 29 100.0 36 ............................. TATTCGCAGATAACTAAAAATTAAAAAATAAATTTT 7616 29 100.0 37 ............................. AACCTTCTTCCATTATTTTTTTGTTATCTTTTAATTC 7682 29 100.0 37 ............................. CAGCAGTATTAAATAATCTTATATCTATGACAAAAGG 7748 29 100.0 38 ............................. AGTGTTAGAGCAAATCGTTTTTAGCCCTTCCCAAGCAG 7815 29 100.0 35 ............................. TCGGATTAACAGTTGGAATAGGGGCTATTGTTATA 7879 29 100.0 38 ............................. ATATCTATTTTATCGAGGTATTTGTCTATTTTATTTTT 7946 29 100.0 36 ............................. GTTGCATTTGTATATCCTGTACCATCACCAATTATT 8011 29 100.0 37 ............................. GACTACGAGAGGGCATTTGTTGCTGCTTCTATAGATA 8077 29 100.0 37 ............................. AGTGTTGAACTAGCTTCATCTCTAATCTTAACTGCTG 8143 29 100.0 37 ............................. GGGTGGGAGATATGGCAACTATCCACACATGAAATTG 8209 29 82.8 0 ................G....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GAAGAAGAATTATCATGTAGTGTATAAAATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGGGGGGTTAATACAATGTATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTATGAGAAAAAATTAGAGAAAAATAAGTAAAATAAATATATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTGTATGTTAAAAAATGGTATAATAAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTTAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGGGTGTGTGATAAATATTATCAATTGCACTACTCATGGCTCACTGCAAATTTAAGAGAGTTGTATAGGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : CTAAATAAAGAAAAGAAAGCACTTACAAACATGTAGGTGCTTTTATTTTGCTCAAATTTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAAACTCTTGATTTATTGTACGTACTATATTATAATTTAAGTACGGACAATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCAGATATATTAAATGAGTGTGCTGATAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTTTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAAATAATGAATTTTGAAGGAAAAGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 9840-10436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000019.1 Clostridioides difficile strain BfR-CL00262 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================ ================== 9840 29 86.2 36 GA.............A............G GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 9905 29 96.6 37 ............................G GCATTTCGGCATATGACAACTGCTATGAATATAGTAC 9971 29 100.0 38 ............................. GTTCATTTGTATTTCTTCCAATTTTCTGTTCTATCCTA 10038 29 96.6 144 G............................ GATAAATTTTATAGATTTGTAAGTTTAGTGAAAGAAGAATGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTGTATAGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATAGAGATAA 10211 29 86.2 37 GAG.........................G GTTTGAGAACGCTGTATAAAGCTTGTAGCTAGTTCTT 10277 29 89.7 37 G..............A............G GTTGCATCATTAAATATTTTCCCTACAAACTCTTTTC 10343 29 100.0 37 ............................. AGTACATACAAAGAGTCTATAAAATTATCTATAAAGG 10409 28 82.8 0 G...................-.CT....A | ========== ====== ====== ====== ============================= ================================================================================================================================================ ================== 8 29 92.3 52 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTGATTTAGAAGAAAACGAACTCAAAGGCGTTTGGGAAACTAATGGTTCTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGATAAGGTTAGAAATTGGATAGAGGAAAATAATAGACCTACTAAGATTGCAGGTGAAAAGAAAAATTATCATGTGGTTTATAAAATTGAGTAAATTTATCAGTTGTATTAAATAATATATTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATATTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGTGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAAAAAATAAGTAAAATAATATAGATAAAGCACTTGGATATTATGATGTTTCAAGTGCTTTATATGGTATAAAATGGTATAATGGAAGTAGG # Right flank : ATTAAAAATAATTCAAAAACACTTACAAATGAGTAAGTGTTTTTTTAATGAAAGGAGGTGATAATAATGTAAAAATTTTACTAATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGATAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAGGTTAAGGAAAGTTTATATACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAA # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-1.59, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : TTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 81476-80986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000004.1 Clostridioides difficile strain BfR-CL00262 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 81475 29 100.0 37 ............................. GGTAATTCTGGTGATTTGGTTGGAGTTCCTGGTGAAG 81409 29 100.0 36 ............................. GTAAATCAATATTTTCCATCTCTTCTATGCTATCAA 81344 29 100.0 37 ............................. TTTACAATTCCGCACAGATTTTTATCTAATCTTAAAT 81278 29 100.0 38 ............................. ATTGCTAGTATCAGCATTACTCCAAGTTGCTAAAGCCC 81211 29 100.0 37 ............................. AGGGAACCCCACCAGCCCTTAACTCTATTGTGTTACA 81145 29 100.0 37 ............................. TGATAGAAATCGCGATTGGAGCAACAACAGCAATAGC 81079 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 81014 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACTAAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 84119-83760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000003.1 Clostridioides difficile strain BfR-CL00262 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 84118 29 100.0 36 ............................. AAGAAGTCAAAGTATTGAAATTTACACAATTCTCGT 84053 29 100.0 37 ............................. CACTCTTAAGTTGTGACCTATCTGATATATGATTAAA 83987 29 100.0 37 ............................. TCAGAATTAACTAATGTGAATTTTTTAGACATGTCAT 83921 29 100.0 37 ............................. GTCTCATAATCTACATATTCATCATAATTCTTTTTAA 83855 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAT 83788 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGA # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAAACAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACATATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 192809-192453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000003.1 Clostridioides difficile strain BfR-CL00262 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 192808 29 100.0 36 ............................. GATAAAAGTTCTTTTCTTACTCTTACTTTTAAAGAA 192743 29 100.0 36 ............................. GTAATTCCTCGGCTTTCTTTTTTAGATTGCATAATT 192678 29 100.0 36 ............................. GTTATAGTCTTTTGGATAACTACCCAATTAGGATTT 192613 29 100.0 37 ............................. GCATATGTATATATCATTGAAATAAGTTTTAAATGTC 192547 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 192481 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 93.7 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTGTTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACGTAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8209-9532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000006.1 Clostridioides difficile strain BfR-CL00262 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8209 29 100.0 37 ............................. TATCTATATGTCCCCTGGGGACATCTTTTAAAATTAA 8275 29 100.0 37 ............................. CAAACTTTATAATATTTTAAACTTATCATATAACAAA 8341 29 100.0 38 ............................. GGAACATAAACATCTAAACTACCACTATTAACCTTATC 8408 29 100.0 37 ............................. TCAAAATTATTTAGTAATATTAAACAAAATATTAGTC 8474 29 100.0 36 ............................. AGACATAGCAAGTATAAGAGGATGCAATCTTTTCTA 8539 29 100.0 37 ............................. CCTAGAGACAACAGAATAAACATAATATATAAGCATA 8605 29 100.0 36 ............................. GTAATTTTAAGACTTTTTGTGTATGGAAATGGAAGG 8670 29 100.0 36 ............................. GTGTTAAATTGGTATTTTCTCTTGCTTTTTGATAAA 8735 29 100.0 37 ............................. TAGATTGTAGCCTCTTGCATTTTAATTATAACATAAT 8801 29 100.0 37 ............................. TATGGCAACTCAATAGAATCTATTTTAGGGATATTAA 8867 29 100.0 38 ............................. GTACTATTTCCAACTTTTTTTTCGAGTTCTGAATACTC 8934 29 100.0 37 ............................. TGTAAAATGTGACAATTTCAGTCTCTTTACTCTGCAA 9000 29 100.0 37 ............................. AAAGTTTTGAAAGGCGAAAATCTTATTTTTTCAGATA 9066 29 100.0 17 ............................. CTTTTTGAGAATGCACC Deletion [9112] 9112 29 100.0 37 ............................. ATCCTCGATAAACTTTTCTAAACTTTTTAATTTATTG 9178 29 100.0 37 ............................. AAGGGTCTGGATGATATGATTATTAATTCAGAACAAC 9244 29 100.0 36 ............................. AAACTAACAAAATTTCTAACATATTTTCTAACTTGA 9309 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 9375 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 9440 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 9504 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.0 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TAAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAATAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57843-56896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000007.1 Clostridioides difficile strain BfR-CL00262 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 57842 29 100.0 36 ............................. CAAATATAAACTTTTTTATTATAAGCATTAGCCAAA 57777 29 100.0 37 ............................. ATGAAGCTTGCAAAGTATTCTCTAAAGTCCTCTGCCT 57711 29 100.0 35 ............................. TGGTACACTGTATATAACATATTATTAATACTTGT 57647 29 100.0 36 ............................. CATATAAGTGCTTATGTTACAGCTTATGCAAGGATA 57582 29 100.0 37 ............................. TTGAGTGACTTATATTGTTTGACAGCTCTTTGTAAGT 57516 29 100.0 36 ............................. TATGAAAATAACCCTAGAAACAACCATGATGCAGTA 57451 29 100.0 37 ............................. ATCTTTCTAGCTATTTCACAGTCTTCTTTATTATCGC 57385 29 100.0 37 ............................. AATATAATTATAACACAGGAGTTCCTTAAATGAAAAC 57319 29 100.0 37 ............................. AGATGTAATGAGAAGTTTATTGTATCTTGTGTAGATG 57253 29 100.0 37 ............................. TTAAATATATCAGAAGGAGAAAATAGAGATGGGAAAG 57187 29 100.0 37 ............................. TAAAAGTATTAAAAATACTAGTTTTTATAGGTAAGAG 57121 29 96.6 37 ............................A AAAGAAAATTTTTATTAGCCTTACATGCACCACATGT 57055 29 100.0 37 ............................. TCGTACGGATGCGTACGACGTAATTATAATTTAATAT 56989 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 56924 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57786-56573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLW010000009.1 Clostridioides difficile strain BfR-CL00262 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 57785 29 100.0 37 ............................. TAATCTATTGATGGAAGAGGAGCAGGGTCAGCAGCGA 57719 29 100.0 36 ............................. GATTATCTACTGTTGCAGGAAAAGCAATTTTGGTTT 57654 29 100.0 38 ............................. TATTAAGGGGTACTCTTACCCTGTAATTTCAATACTTT 57587 29 100.0 38 ............................. GCTTTTGAAGAACAAACAATAGATTTTTACGACTCATT 57520 29 100.0 37 ............................. TACTGAAACCCAGCCATATACATATTTACATACTCCA 57454 29 100.0 39 ............................. TCCATTCTTGCATCACTTGCTCCAGTAGTCATAACAACA 57386 29 100.0 38 ............................. CATTATTGTTGCTGAATAAATCCACTTCTCATTCTCAA 57319 29 100.0 38 ............................. ATCGTAAGAACCAGGAATATACGGAAGATCGTAGAAAA 57252 29 100.0 35 ............................. AGAGTTGAGGTTGAGTTGGAGGATATTATTTAAGG 57188 29 100.0 36 ............................. TTTTTATTCTAAGAAACTTTTCAATTCTAGTTCTTC 57123 29 100.0 32 ............................. AGTCCAGACCCTAATCCTCCTGTTGACCCAGA 57062 29 96.6 36 ........C.................... ATAGTCAAAAGCAACATCATAATCACGTATATTATC 56997 29 100.0 36 ............................. CAACATGTCAGTAATATTGAAACAGGAAATTCGAGT 56932 29 100.0 37 ............................. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 56866 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 56800 29 96.6 38 ...............T............. AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 56733 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 56667 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 56601 29 93.1 0 .......G.......T............. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAATATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAACATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //