Array 1 502481-503973 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJU01000001.1 Salmonella sp. S124_66631 NODE_1_length_628147_cov_141.446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 502481 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 502542 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 502603 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 502664 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 502725 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 502786 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 502847 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 502908 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 502969 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 503030 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 503091 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 503152 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 503213 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 503274 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 503335 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 503396 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 503458 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 503519 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 503580 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 503641 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 503702 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 503763 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 503824 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 503885 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 503946 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 520105-522008 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJU01000001.1 Salmonella sp. S124_66631 NODE_1_length_628147_cov_141.446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 520105 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 520166 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 520227 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 520288 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 520349 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 520410 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 520471 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 520533 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 520594 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 520655 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 520716 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 520777 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 520838 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 520899 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 520960 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 521021 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 521082 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 521143 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 521204 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 521265 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 521327 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 521430 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 521491 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 521552 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 521613 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 521674 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 521735 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 521796 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 521857 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 521918 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 521979 29 96.6 0 A............................ | A [522005] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //