Array 1 17661-16701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXQ010000003.1 Bacillus altitudinis strain 179-I 9D2 HS NODE_3_length_441415_cov_161.837587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 17660 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 17595 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 17530 32 100.0 33 ................................ ACTCATGGCATCTAGTATTGGTGTCTCTGTGCT 17465 32 100.0 36 ................................ ATGTAACTATGGAAGAATACGCCCATCAACGTTAAA 17397 32 100.0 35 ................................ AGCTTTATTGATCCTGCCCTTGAAACTGCTGAGAT 17330 32 100.0 33 ................................ AAAAGTAATTGAAGAATTAACAAAAATTCTAAA 17265 32 100.0 35 ................................ AGTGCGGCTGGGCTTTAGATATTAACGGTAACCCT 17198 32 100.0 36 ................................ GACTTTGCCAATCAAGGCATCCCGAATCAAGGCGGG 17130 32 100.0 36 ................................ TAGCTGGCGTCGCTAACCTGATCAAAGACGTACCAA 17062 32 100.0 34 ................................ CGTATTCAATATAAAAACGGCCGCATTCTCGACA 16996 32 100.0 34 ................................ CTTTTGAACCCACAACGGACGATCGTCTGCTATT 16930 32 96.9 33 .........C...................... CTGGGGCTTACGAGTTACGACTGATCAGCATTT 16865 32 96.9 34 ...........C.................... TTATTGTAATCGAATCGACCTTTAGCCCACAGAG 16799 32 90.6 35 ......T....C.......T............ AACAAAAACGATTTTAAAATTGATGCTGCTGCATC 16732 31 78.1 0 ........T..C......A....-..C...GG | A [16712] ========== ====== ====== ====== ================================ ==================================== ================== 15 32 97.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCTTTGGAAGTAGGGGGATGTTTTTATATGATGGTTGTGGTTACGTATGATGTCAGTACAATTGATAGAGCTGGGAAAAGAAGACTGAGGAAAATATCTAAAATTTGTCAAAATTATGGTCAAAGGGTACAACATTCTGTTTTCGAATGTATTGTAGATTCAACGGAGTTTGCTATGTTGAAGAATAAGTTGTTGCAAGCTATCAATGAAGAAAAAGATAGTATTCGATTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGTGCAAAGGAAACAATATTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAGTTTCCCTGAATCATTCGCACTTAAAAAAGAAAGATTTTTCGACAAACTCTATCTTTATGTGTCTCAATAATTTATATTTTGTATAAATAGAAGTATCTTTTTTAACTGATTTTGATAAAAAAAGTAGTTTTATTTGTTTTTTTTACTAAAAATCGCC # Right flank : TCTAACTTATTATTTATGTTGAATTTTTAATGGATGCTAAATTATCATTCTTTTCAAAAGATAGTAAGTTTGCATATTTTTATTTCAGTAAAATTCAATAGGAGTTCAATAACCTCTTTTCCTTCAAATTTAAAGTGAAAGAGGTTTCAATGAAGATTGATCAGCCTATATATGCTGACAGCGTTTTGTTTGGCTTTTGTCATAAACAATGTACCTCGTTTGATGCTGCCCATCTATATACTTTCAATGATCGGGCTTATGTTCTGTCTCGGTCATATTGCGCTCCATTATCTACAGCGGATCAGATATTTGTTATACGATGAGAAACAATTGAAAGAGAATCAAATAAACAAACCTCCCGCTAAATGAAGGAGGTTTTTTACTTGTCTGTTTTTCAATGATTTTCTCGTTTGACTCCTTGAATTGTCTCAAAAGAGAGACGATGTTCCTCGTAAATCTGATTTGGACAATCAATAAGAGCATAATGATCCACGAGCTAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18273-17846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXQ010000006.1 Bacillus altitudinis strain 179-I 9D2 HS NODE_6_length_279777_cov_174.023965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18272 32 100.0 34 ................................ AAAAATAATTGGCCGTTCTCCCAAATGAGTACAA 18206 32 100.0 33 ................................ ACGGTTAGGGTTTTCGGTTAAAAATATTCGTCC 18141 32 100.0 35 ................................ CGTTCATCCCACATCGGCGACACCTCCGGTTAAAT 18074 32 100.0 34 ................................ ACTTTGATCACTCCATGTGATATAATTAAGATTC 18008 32 96.9 33 .............A.................. TCTGAATAGACCTTTTTCAATTCAACGGATTTA 17943 32 100.0 34 ................................ AGCGATGACAAGGCTCTCAAGCACATTGTATTTT 17877 32 75.0 0 ..........C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTCGCGATGTTGAGGGAGACGCGGTCTACGGCAAATGTCGCACTTTACATGAGTGCGTGGATTGAAATATTTCAAGAACTTTTGTAATGGCTCTCAAAAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTACCACCGCCTTTTAGATAACGCATTACAGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20338-18559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHXQ010000006.1 Bacillus altitudinis strain 179-I 9D2 HS NODE_6_length_279777_cov_174.023965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 20337 32 100.0 32 ................................ TTGTATGTTAGATAAGTTTATTTCTTTATCAT 20273 32 100.0 33 ................................ TAAGAAAAGTAGTGCCAGTATTGCAGCAGTTGA 20208 32 100.0 34 ................................ TGTAATATTTTTGCTTTTTCCAAAACAGCCAGTA 20142 32 100.0 35 ................................ TGCTTTGAACGGAGAGAAAACCCACAGCACCTATT 20075 32 100.0 33 ................................ ACAAGACATTGCAAACAAGCTCAATGTCTCCAG 20010 32 100.0 35 ................................ AAATAAATCTTTGTCACAAACTCAAAACGAGTCAA 19943 32 100.0 35 ................................ AGCAAAAAGCTGGGTGACAGGTGATGCTATAAAAG 19876 32 100.0 33 ................................ AATGCCTATAACGTTTCATGATTCATCAAAAAT 19811 32 100.0 35 ................................ AACATACGCAAGATGAAATTTTTTCAACCTTACAA 19744 32 100.0 34 ................................ GACTCGCGCTTTGCCATGACGACATTGCCCTCTA 19678 32 100.0 35 ................................ ATTTTGTTTGTCGCTCATACCATTACCTCCTGATA 19611 32 96.9 35 A............................... TCAGAAGAGACATGCTCCCCTGATGACGTTTCAAC 19544 32 100.0 33 ................................ CGCTATCTCCAATCCTTGTAATGCACCATAGAT 19479 32 100.0 33 ................................ CTAAATCCACTGAGACAGCAGGCTTATCGAACC 19414 32 100.0 33 ................................ ATCCAAACACCGTCACCGGATGTGTTTGAAATC 19349 32 100.0 33 ................................ TATTATGAATACTCTTGTCAGGCAGAAGCTTAA 19284 32 100.0 37 ................................ TTGACGCTCATCTTGCTGACGGTGTAAAGCATGTGAC 19215 32 100.0 34 ................................ TACCCGGACAAAGGCGCCAAGAATAACGGTATCG 19149 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 19083 32 96.9 34 ............G................... AAAAAAGATGTACCACGGATGCCATGAATATCGG 19017 32 90.6 130 ...........T.......T.......A.... TACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCGGGGGTGAAAACTTAATTCCTATATAGAAATTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA T [18988] 18854 32 96.9 34 .............A.................. AGAAAAAGAAAAGTGTGATGAAAAAGAATATCCA 18788 32 96.9 35 .............A.................. TCGCGATGTTGAGGGAGACGCGGTCTACGGCAAAT 18721 32 96.9 33 ........T....................... ATTTCAAGAACTTTTGTAATGGCTCTCAAAAAA 18656 32 96.9 33 ...........T.................... ACAGTACCACCGCCTTTTAGATAACGCATTACA 18591 32 90.6 0 ...................T..A....A.... | T [18562] ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 26 32 98.4 38 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAAATGTCCGTGAACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAAATAATTGGCCGTTCTCCCAAATGAGTACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGGTTAGGGTTTTCGGTTAAAAATATTCGTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTCATCCCACATCGGCGACACCTCCGGTTAAATGTCGCACTCTACATGA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //