Array 1 429634-431308 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTI02000002.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0307 NODE_2_length_721122_cov_40.224099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429634 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 429695 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 429756 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 429817 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 429878 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 429939 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 430000 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 430061 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 430122 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 430183 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 430244 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 430305 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 430366 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 430427 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 430488 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 430549 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 430610 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 430671 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 430732 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 430793 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 430854 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 430915 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 430976 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 431037 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 431098 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 431159 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 431220 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 431281 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449181-452994 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTI02000002.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0307 NODE_2_length_721122_cov_40.224099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 449181 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 449242 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 449303 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 449364 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 449425 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 449486 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 449547 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 449608 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 449669 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 449730 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 449791 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 449852 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 449914 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 449975 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 450036 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 450097 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 450158 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 450219 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 450280 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 450341 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 450402 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 450463 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 450524 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 450585 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 450647 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 450708 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 450769 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 450830 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 450891 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 450952 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 451013 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 451074 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 451135 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 451196 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 451257 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 451319 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 451380 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 451441 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 451502 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 451563 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 451624 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 451685 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 451746 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 451807 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 451868 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 451929 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 451990 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 452051 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 452112 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 452174 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 452235 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 452296 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 452357 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 452418 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 452479 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 452540 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 452601 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 452662 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 452723 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 452784 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 452845 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 452906 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 452967 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //