Array 1 40629-40358 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJTN01000003.1 Pectobacterium polonicum strain DPMP315 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40628 28 96.4 32 T........................... ACACCATGACCGTCATCAACACCGCATCCTGT GA,T [40621,40624] 40565 28 100.0 32 ............................ CGATTACAGCTCTGAGCATCAACGATGGCGGG 40505 28 100.0 32 ............................ TGCGGGGAAATATCCCCTCGCAAAAATATCGT 40445 28 100.0 32 ............................ ATAGAGTGACCTTGCTCGGTCACAAACTTAGC 40385 28 75.0 0 .......AT..T.C...T..TA...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCACTAACGATGAATGAAAATGCCGACCCCACGGTGCGACAGGATTTCGAGAGCTTTTTTAATCGGTTAGTGCCGGAGAATGAACCGTATTACCTTCATACTTATGAGGGGAGCGACGACATGCCCGCGCACCTAAAAGGCAGCTTGCTCGGAAACAGTCTGACAATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGTATTTACCTGTGCGAACACCGCAACCACGGTGGCAGCCGCTCGCTGGTTGTTACGCTGAATGGGGAATAGTCTAACGGAATGCGTCGTGCCAGCGACGCATCCTGATAAATACCGAACTGCCTGCACGGCAGTGAACACAACCGCTTGTGCACCGATTTCAGCAATTGCTTTTTAAGCTGCCCATGCGGCAGTGAACCCCATCCTGACGCAACATCCTCCGCTTGCAGCTTTTCTAAGCTGCCTATGCGGCAGTGAACAATTTGAATCTGCTGTTGACGAAAGCTATTCC # Right flank : TGGAAGAACGTAGCTGTGCTGGGGTTATCTGCTCGTCCTGAAACTCGAGTTATGTAGAGTAAAAGGGTCTTTTATACCGAAGTTGTATCCATTTCTCGCCAGTTCAGCCAGATTCTCATATCAAATTCCAACTGATGGTAGTCTGGGTCCATATGGCAGCAGAGTTGGTAGAAGGCTTTGTTGTGGTCTTTTTCTTTGAGGTGGGCGAGTTCGTGTATCACGATCATGCGTAGAAAATCTTCCGGGCCGTCACGAAATAACGTCGCTATTCTAATTTCGTTGTTGGACTTTAATTTCCCGCCCTGTACGCGTGCCACAAACGTATTGGTCCCGAGCGTCCCTTTTATTGGATTCTGTTTATTATCGTAAAGCACCTTGGATATTGCGGGAGCATTCTTCAAATATCGCTGCTTCAATTCTGCGACAAATTGATAGAGCGATTTATCACTCTGGATGTGATGGCGGTCAGGGTATCTTTTTTCCAGCCACAGGCCGAGCTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151183-151577 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJTN01000006.1 Pectobacterium polonicum strain DPMP315 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151183 29 100.0 32 ............................. AGGATACTGTGCAGCATCAAATGTCGCACCGT 151244 29 100.0 32 ............................. ATAGACGCGCTCGTTGTAATCGCGCCAAACGG 151305 29 100.0 32 ............................. TAATACAGATTTTCGTTAACTTTTGACTTCAG 151366 29 100.0 32 ............................. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 151427 29 93.1 32 .A...........T............... AGCGGGTGGGTTGGCTTTAGTGGTTGGACTTA 151488 29 100.0 32 ............................. CTATAGACTGTCGGTGCCGGAACTTCCCACCA 151549 29 93.1 0 .............G..............C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGGGGGATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCGGCGATCCCAGAGCCGAAACCGTTTGGTGACAGTGGTCATCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAAAACGTCCCACCGCGTTTACGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATTGAACTGGCTGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATTTGGATGGCCTGCGGTTAGTCTCATTTTCACCTATTGAAAATCAATAAGTTAACGATCTTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACCGAAAAAAGTGTTATAAAACAAATCTCTATTTTTAGA # Right flank : CTAATCCGTTCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAAACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154331-154665 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJTN01000006.1 Pectobacterium polonicum strain DPMP315 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 154331 29 96.6 33 ............................A GCATCTTTTACTTTGCGTGGGTCAGCGCTATAC 154393 29 100.0 32 ............................. TTGCCCGCTGTCTTTAAGTGCCATGATAGAAC 154454 29 100.0 32 ............................. AACTGATCGAGCGCCGCTGTTTCGCTATACAT 154515 29 100.0 32 ............................. AATTAGCAAATGAATTTGTTGAGCAAAAAAGT 154576 29 100.0 32 ............................. CGCTCAAGATGCTTTCAGACTTCCAGAATAAG 154637 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCATTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTGCTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGACATTCGGTTGAGAAAGAGTATTTTTAACGGGGAAGATTTTTACCGAGAAATAAAAATGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCGAACTGGCAGAACAGGGCAACATGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATTTGGATGGCCTGCGGTTAGTCTCATTTTCACCTATTGAAAATCAATAAGTTAACGATCTTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GAGCAACGAGAACGGCGATTACTGTAGCCCTGAGTGTTCCCCGCACGGAGCCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCTCACCGTAATGGTGACGTGCTATGCCGATGATTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTCGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAACATGCGGAGAAAGTGGCGCTGTCTGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGCTATGATTTCACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTTGGTAGCCTGGTTAGCAGTGGGCAGTTGGGGCGTGAAGAAGGTTCCGCGCTGCTGGGTTTTATCTCGTCACCACGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //