Array 1 948675-950288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040568.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 948675 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 948736 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 948797 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 948858 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 948919 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 948980 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 949041 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 949102 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 949163 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 949224 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 949285 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 949346 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 949407 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 949468 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 949529 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 949590 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 949651 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 949712 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949773 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949834 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 949895 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 949956 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 950017 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 950078 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 950139 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 950200 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 950261 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 966421-967060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040568.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 966421 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 966482 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 966543 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 966604 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 966665 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 966726 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 966787 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 966848 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 966909 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 966970 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967031 29 96.6 0 A............................ | A [967057] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //