Array 1 3137311-3136506 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR861808.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate 5d8c9f00c6184d00f9da85a6:sample:O1960-05 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3137310 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3137249 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3137188 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3137127 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3137066 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3137004 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3136901 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3136840 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3136779 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3136718 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3136657 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3136596 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3136535 29 96.6 0 A............................ | A [3136508] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3155913-3153443 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR861808.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate 5d8c9f00c6184d00f9da85a6:sample:O1960-05 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3155912 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3155851 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3155790 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3155729 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3155668 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3155607 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3155546 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3155485 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3155424 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3155363 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3155302 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3155241 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3155180 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3155119 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3155058 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3154997 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3154936 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3154875 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3154814 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3154753 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3154692 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3154631 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3154570 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3154509 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3154448 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3154386 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3154325 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3154264 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3154203 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3154142 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3154081 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3154020 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3153958 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3153897 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3153836 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3153775 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3153714 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3153653 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3153592 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3153531 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3153470 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //