Array 1 8145005-8143952 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629775.1 Streptomyces sp. TLI_053 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8145004 29 100.0 32 ............................. GCGAAGCCGCCGCCGGGGTGGTAGACGACGGC 8144943 29 96.6 32 .................A........... TTGCATGCTAGGCCCCAACTTGGACTTGACAG 8144882 29 96.6 30 A............................ GGCGCCGGCGCGGGTGACGACGTGGGTGAA 8144823 29 93.1 32 .....T...............A....... TCGCCCGCGACTGGAAGGTCAGCCGGCCGACT 8144762 29 96.6 32 ............................T GTGGGGCAAATGCTTGACTTGCTCGTCGGCCC 8144701 29 96.6 32 ............................G TCGAGCGTGCGGCGGAGTAAGGCGGTCACGCT 8144640 29 100.0 32 ............................. TTCCTGTACGTCGCCCTGAGCCGCGGCCGACA 8144579 29 100.0 32 ............................. GAGTTGATCCCGTGGCTGGTCGGCCTGCGCGG 8144518 29 100.0 32 ............................. ACCTTTGTCGCCGACACGAGCAGTGTCCGTGC 8144457 29 93.1 32 ....A.......................G TTGATGACGATCCTCGGCTGGGTCGCCCGGGG 8144396 29 100.0 32 ............................. GAAGCGGAGCTTGTGTGCCTGGAGGGGATGTG 8144335 29 100.0 32 ............................. GGCGTATCCCCGATGATCACCCAGCGGGCGAT 8144274 29 93.1 32 .......T....................G AACGACGAGGTCCTGGGTCGGCGGGACTCGAT 8144213 29 93.1 21 ....A...................A.... TGGTTGTTCCTTGCTCAACTG Deletion [8144164] 8144163 29 100.0 32 ............................. TTGCCCGAAGGCGGCTCCGATCGGCACGGATT 8144102 29 93.1 32 A...........................T GCGATGTTGAGATCGGTCTCTCTATGCTTGAG 8144041 29 82.8 32 .................A.AAA..A.... TGGGACAACGTCAAGCGCTGGACTGCTGAGAC 8143980 29 86.2 0 ...A...T..................G.T | ========== ====== ====== ====== ============================= ================================ ================== 18 29 95.6 31 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : TGCGTACTTGTCCCAGGAAAGCCCCGCCCTGCGGACGGCCGCCTCGCCAGCAGCATCGATCCGCTGGAACGCCGGCGTCGCCTTACCGAGGTCGTGAATGCCGCACAGCCACGAGAACAGCCGCCTCCCCTTGCCGGGGCCTCCCGCCACGACGTCGAGCTGCCGCACCGTCAGCTGAGGCAGATAGTGGTCCCAGACGACCTCCGCCACGGCGGCGGTGTCCAGCATGTGCGACAGCAGAAGGTTGACCGTCCCCCCGGCCTTCCCGGCGGACTTGCCCCAGAGCGCGCCCAACCAGGCCCTGACATCGACCGGATACCAGCGCCAGCGATCCACGACCACCGTGTCCACCTCCACGTACGAGTACGCTACGGAGCGTAAGACACCCCACTGACAACACGCTTCGGAGTGAAGGAAGATGAAGGCAGTACATCGGCTTCGCTCCGATCGAACCGAATCAGCCAGCGCCCCGTGACACCAAACGTCGCAGGTCAGCAAGT # Right flank : CCGGGAGGCCGCCCGTCGGTGGGCCGGCCCGCTCGGACCGGCTGCGGCTCTACTGCCAGGCCTTCTGTCGCCATTCTGACCTGCGCACCTCAAAACAGGGCTTCCATAGCTCTAGATGGCAATGATTATCAGCGCTAATCTAACCCCGCCGCTCGCACCACAGCCGAGTCGGCGCCGTCCTTCGCCGTCGCTACCCTGCTCCGGCGCGGGTGCGGCAACGTGAACTTCTGCCGAGGGCAGCAGCCAAGGGGCGGGACCATGGGCGAACAGACCCACGCAGCCGCAGTACTCACCAGATCCCCGGACGGACCGCCCGGGGCCGGTGTGCCGTCGGGGCCGGGCGCACGGCGCAGCCCGGGCGTCGCGCTCGTGGTGGCCGCCGGGGTGGCGGCGGTGCTGCTCGGGACCGGGTTCTTCGGGTGGTCGCACGCGCCCGCGCTGGCCACCTGGCGCACCGTGCTGATGGCCATCGTCGTGCAGGGTGTGCCGTTCCTGCTGCT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8154720-8155358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629775.1 Streptomyces sp. TLI_053 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8154720 29 100.0 32 ............................. TGGTTGGACGCCTGGGGGTCGTCCTCGAAGTA 8154781 29 96.6 32 ............................G ATCGAGCAGTTCAGCCGCGGCCTCGAGCAGAA 8154842 29 96.6 32 ............................A CCCCAAGGCCTGGCGCACGACCACCCTGCCGG 8154903 29 100.0 32 ............................. CGGTACGAGAGGGGCATCCGTGGGCATCTACG 8154964 29 100.0 32 ............................. GGCTTTGGCGTGGGACATCGCGGCCTCGGCCG 8155025 29 100.0 32 ............................. CGGCCACGTGCGAACTCACACGCTTCCCTGAA 8155086 29 100.0 32 ............................. CCGGTTGCTCGGCGGGCGGTCCGCAAGCTGGC 8155147 29 100.0 32 ............................. AGACGCCAGAGCGGCAGCGCGAGGCCGTGTGC 8155208 29 100.0 32 ............................. CGCCGCTACGGCGTGCAGCTCACCGACGACAA 8155269 29 100.0 32 ............................. GTCAACTCGACCGCCCAGCTGTCGGCGGCTCT 8155330 29 93.1 0 .............G.........G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTCGGCCCCGCACACGCGGGGATTGCTCC # Left flank : AAGACCCTCCTCACTCCCGAGGGCACCGACATGCCCGACGCCGAGGTCAACGAACTCTGGGACGAACGCGCCGGCACCGTCCAGGGCGGCGTCAACTGGTCCGGCACCGAAGGCACACCGGCGCCCGGCGTCTCCGACCCGGGCATGGGCGACGAGCACCTGGCCATCATCGGCCCGGAGTTCACCCAGGACACGAGCAGCCCATGACCGTCATCATCCTCATCGCAGCCCCCGAGGGCCTCCGGGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCCGGCGTCTTCGTCGGCACCCCGAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGAATCGGCGACGGCCAGGCCGTCCTCGTCGAACCCGCCACCAACGAGCAGGGCTGGACCGTCCGCACGGCGGGGAAGGATCGCTGGACGCCCGTCGACTTCGACGGACTGATTCTCTCAGCCCGCTTGCGCCGATAAACTCGCAGGTCACGAAGT # Right flank : CGAGCGGACCTGTGTTCGAGGGTTGCGCCGCTGGTCGGCGGCCACGCGATGCCGCAGGAACTCGTGTCCTGAACCCCTTCGCCCGGTCTCTCGATCCGGCCGGAGGTTTCGGGACCTTCATGGGGACGTTCCCGGTGCGGGGTCCCGTCCGGCGTGGGTTCCGTATGCGGCGGCCCTGCCGGCGTGCTCCACCGGGGGAGCACGCCAGCAGGGCCGCTGTCGCAACGCCCTCCGGGAGCCGCTGAGGCGCCTCCCGGAGCTCGTCAGGCCTCCAGGTCGTAGACCGCCGTCACCGGTGCGTGGTCGCTCCACCGCTCGGCGTGGGTCTCGGCGCGCTCGACGTAGGCTTCGACGGCCCGCTCGGCCAGGGCGGGGGTGGCGACCTGGAGGTCGATGCGCCAGCCCGAGTCGTTGTCGAAGGCGCGGCCCCGGTAGGACCACCAGGAGTAGGGGCCGGTGCGGTCGGGGTGGAGGCGGCGGACGACGTCGACGTAGCCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9782406-9782906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629775.1 Streptomyces sp. TLI_053 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 9782406 37 100.0 35 ..................................... ACGCGCTCCAGCAGCGCGAAGTACGACGGCAGCAG 9782478 37 100.0 36 ..................................... GACGACACCGTGCGCCACATCGACGGTGCGGTGATC 9782551 33 89.2 34 ...................----.............. AGGTAGTCGATCGCCCCTTCGGGGTCCGTACGTG 9782618 37 100.0 37 ..................................... CATGTCGCTCGACAACGCGACCACGATCATCCCCGGC 9782692 37 91.9 37 ...C..A.......................A...... AACCTCCCGGACGGGGTGCTCGGCGAGGGCTTCGGTG 9782766 36 86.5 18 ............T..G.....-.......G....G.. GCCGAACGGGTGCGCAGC Deletion [9782820] 9782820 37 75.7 13 A...T...T.......T.......T.GCT.....G.. ATCGCGATCCTCG Deletion [9782870] 9782870 36 70.3 0 .......CT..T.-.....T.....CG...C..G.TT | A [9782891] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 89.2 30 GTGGCGGTCGCCCTCCCGGGCGGCCGAGGATCGCAAC # Left flank : CCTGCACGACGGCGGCGAACGGCCGCCCGGCGTGCACCGCAGCCAGCCACGCGCCGGCCTCCTTGTGAGGAACGCCGACCTTCCCGCCACGGGCCTCGGCGGCGTGCAGACCGTGTTGCCAGGAACAGGACCCCTTGCCGACGTCGTGCACCAACGCCAGGTATTCGGCGATCGGGCCGGCTCCGAAGGCAGTGGCGAACTGCCTTGCTAACATAGCGGATCCGCGTAGGTGCTCCTCCAGAGTATGACGTCGGCCTGATAGGTTCCGGCTGTGAGCCCACAGCGGCGTCACGCCGCTGCTTGAGTCCTCTATACCGATCAGATTTCCCATGACCTGGACCATACGGCTGTCGGCCGACAGCAAACGGACATAGTTCGGAACCCGAAGTGCACAGACGATACACGCTTCACGCCGAAGCAAGATGTCCGAATTAAGTACATCCGAGTCCCTGGAGTACCCCATTGGCTAGCGTCGGATTGCCAGTTGTCGCTGGTGAGCC # Right flank : TCGTGTTCTGCCATGGCCGTGGGGGGATTTCTTCCATGAAGCTGCAGAGATCAGCTGCAGACCTGGGCTGATCATCTTGAGTGGTGAATTGATCAAGGCTGGTCGATTCCTTGCTTCATGGCGAAGCTGTCAACGTCGCGCGCGATGCTCTTGCTGACTGTCGATCACGCTTGCTCAACTTCGGTCACCGAGGCCGATGCCGGTAGGCGGCGCGGTGCCTTCGATTGTCAGTGGTGCGGCCTATGGTCGCGATCGATGATCGTGCATGACGGTGCGTCATGTCTGGTGCCTGAAGGGATGGCGGGGATGGCTGGAAGAGGGGCCATGGAGCAGGAGGGGCTCAGTCTTGCGCGGCGTCGCGGGAACGGGGGCTGGGTGTTTCCGGATCTGGTGATGGAGGTGTGGGGGCCGCTCGCGTGTTTCACCAGGCCGGAGTTGAAGTCGGAGCGTGTCAGTTACCCGGTGATGACGCCTTCGGCCGCGGCGGGTGTCCTGGAGGC # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.41, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCCGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 9788847-9790189 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629775.1 Streptomyces sp. TLI_053 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 9788847 37 100.0 34 ..................................... CGCCTCAGCGAGGCCAAGCCCTCGACCCGCACCG 9788918 37 100.0 35 ..................................... CCGTCGGGACCGCTCGCCTCAACGTGTTTCCCGCG 9788990 37 100.0 34 ..................................... AGTGTCTGAACAGCGCTGCCGTTCAGTGTCTGAA 9789061 37 100.0 36 ..................................... GCCCAGGCCGTCCCGGCACAGCGCACCGAGCCGGCG 9789134 37 100.0 36 ..................................... GCCCAGGCCGTCTCGGCACAGCGCACCGAGCCGGCG 9789207 37 100.0 35 ..................................... CGTTGCACCCGCACCGAGGAGCACGAGCGCCTCGT 9789279 37 100.0 37 ..................................... TCCGGCATCCCGGCCACCTGGAGCTCGCGGATCACCA 9789353 37 100.0 36 ..................................... TGCCAGGCCCAGCCGAAGAGTGCCCAGTGCGAACCG 9789426 37 100.0 33 ..................................... AGCGCCAACCAGACCACCGAGGAGATCGGGCAG 9789496 37 97.3 37 ........................A............ GACGATGAGCCAGGCCACCGCGCTGGTGTCGGTGCCG 9789570 37 100.0 35 ..................................... CCTTCCGGTCGGCGGCGTCGCGGCCGGCCTCCCAG 9789642 37 97.3 36 .......................T............. GTCGTCCCGCCGCCACGGTGTGCCGGAGGCGGCCTC 9789715 37 100.0 36 ..................................... GCCGACGACATGGACGACGCGACCGCCGACGTGGTC 9789788 37 100.0 36 ..................................... TGGTACATCGAGCACTGCCCGGACACGAAGACCTTG 9789861 37 100.0 37 ..................................... TCGGCCTCCGCGGCGAGGAGCGGCGCCGCCTCCTCGG 9789935 36 97.3 35 ...............-..................... CTCGGCGCCGTCGCCGAGGCGGCGGGCAGGCACCG 9790006 37 97.3 36 ......................T.............. GGCAACGGGCTGCGCTGGCCGGGGGACAGGCGCGGG G [9790033] 9790080 37 100.0 36 ..................................... CTGGCCTCGCGGGCGCAGGACGCGCAGGAGTGGCAG 9790153 37 94.6 0 ........G.............T.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.1 36 GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Left flank : CCAGTGCCGCATCCTCGCCCGCCATATCCGCGGCGACCTTCCCGGATACCTGCCCTGGACAGCTGCCTGATGGACCTCCTGCTCACCTACGACGTGGACACGACCACACCAGAAGGCCGTCGCCGACTTCGGAAGGTCGCCAAACTCTGCGAAGGACACGGCCTACGAGTCCAGAAATCGGTCTTCGAGATCGTCGCCACCGATGTCGATCTCCTGCACCTCGTGAACGACATCTGCAAGACCATCGACCCGGACACCGACAGCATCAGGATCTACCGGCTCCCGCACAACGGCTTCAACGACGTTCAGACGCTGGGGGTAGCCCAGGTGCAGCCACACCGCGAAGACCTGGTCCTGTGACAACTCCCTACTTCGGAACTCGAAGTACACACACGCCACGCGGATCGCACCGAAGCACGATGCCCGAATTGCGCTGGTCTGTCGGCGGAAGGCAGTCGAACACTTGGTGCGCGACCCGGGACCGGACCTGGTCAGGTGCC # Right flank : CGTCGTTGCCGGCCTGCCGGGCCGGGGTGTGGTCGGGTAAGGAGCGTCACCTACCCGGCGGGCGCCGAGCGGCGCGGCGCCGCGCCGGCGCGGGAGGTGGCGCGGGAGGTGGCGCGAAGGGCAGCCGCTTTGGCCGGGGTGCCGGTCACCGCCCGGCCCGCCGCCGCTGCCTCCGTGGCCACGGCGACCCGGCACGCCGACGCCAGCCCGTGGAGGGCCGGAGCCGAACTCACCACTCCGGACAACGGTTGGTGCACCTCCGGTTTCGGTGCCTGGCGGGGAAAGGTGCCGGTGCTGCTGACGGACTCGCACTGCGGCACCTCCGACACCTACAGGACCGGCGCGGGCGCGGTGGTCGGAGATGCCACCGACGCCGACACCGCCCTGGATGCCACCGTCATCACCGTCACCGGCGTCTCCGGAAGGTTCTACGACGGGGCGTGGAGCAACACGGCCGGCTACGCGAAGCGGGTCGTCGGCGCCGGCCGCAACCACGTCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //