Array 1 16476-15350 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURT01000335.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002056 CFSAN002056_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16475 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16414 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16353 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16292 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16231 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16170 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16109 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16048 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15987 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15926 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15804 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15743 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15682 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15621 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15560 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15499 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15438 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15377 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 877-2540 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURT01000305.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002056 CFSAN002056_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 877 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 938 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 999 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1060 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1127 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1188 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1249 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1310 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1371 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1432 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1493 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1554 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1615 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1676 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1737 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1798 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1859 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1920 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1981 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2084 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2145 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2206 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2267 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2328 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2389 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2450 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2511 29 96.6 0 A............................ | A [2537] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //