Array 1 1168159-1174007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011032.1 Pseudoalteromonas tunicata strain D2 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1168159 28 100.0 32 ............................ TTTTGGAGTTGATTATGAGCAAGCACAAAATC 1168219 28 100.0 32 ............................ GGGCAGTGGCAAAAGTTATGAGTGCGTTGTAC 1168279 28 100.0 32 ............................ TTTCCAAGATGAGCATAAATTACTAGCGCTAA 1168339 28 100.0 32 ............................ AAACGGATCAAAATCAGGTTTAAATCTAAATA 1168399 28 100.0 32 ............................ ATTTTAATACGCTTTTGCAATCATAATGAATA 1168459 28 100.0 32 ............................ ACGGCAAAACCGTCGACGTCGTAGCCGTATAA 1168519 28 100.0 32 ............................ GCCGTCCCTGTCCCAAAGAACCGCGCTTGCTT 1168579 28 100.0 32 ............................ TTGCTTTTGATAAATTCGCAAGGCCTGATTCA 1168639 28 100.0 32 ............................ AAAATAAAACTAAGGAATAAGACTAAAAACAG 1168699 28 100.0 32 ............................ TCGAAATGGATTATAAGACCCAACAAGATTTT 1168759 28 100.0 32 ............................ ACTATCTTTGGTTTGTGCAAACTCAGTTATGT 1168819 28 100.0 32 ............................ TCTTCTTCTACTACCATACCCAACTCTAAATA 1168879 28 100.0 32 ............................ GTACTCATACCCGTCTTGCTCGGCCGCTGCTA 1168939 28 100.0 32 ............................ ACGGTCACAATCCGCTTCAATATCCCAAGCGC 1168999 28 100.0 32 ............................ AAATTCAACAGTAGAATTCATGAAAAAAATAC 1169059 28 100.0 32 ............................ ATTTACTTACCGCTCGATGACCGAATCTGTGA 1169119 28 100.0 32 ............................ TTCAACCCACTGACCATCAACTAAAATTTTAA 1169179 28 100.0 32 ............................ TCTGTCAGATATTAGCTTGACGTATTTATTGG 1169239 28 100.0 32 ............................ GCACTAATAACGAAGTGGTAAGCGGTCGTTTA 1169299 28 100.0 32 ............................ AGAATTAAATAATATATCACCTCCTCCATTAG 1169359 28 100.0 32 ............................ AACAGGAGAGAATTTAAGCGCCTTACCTGTCA 1169419 28 100.0 32 ............................ ATCAGTTTCACTAGTACCGATGGTGCTACGTA 1169479 28 100.0 32 ............................ TTTTATAATCGACCAGCTGACAAGTATACTGA 1169539 28 100.0 32 ............................ CGTCGTGCTAAGTAACGTTAACGTTTATATGA 1169599 28 100.0 32 ............................ TTGGAAACTGGGTAAAACACGTGTTGTTTTCA 1169659 28 100.0 32 ............................ TAAAAAGAGCTTTAGCTAAAAACACAAAAACC 1169719 28 100.0 32 ............................ TGTAAAAGTAAATCCGAGCATATCATCAGATT 1169779 28 100.0 32 ............................ CACTAACAACCGCACGCATTGCGGAATCTCCA 1169839 28 100.0 32 ............................ TTCACCGCATCTTTTAGATAGTTATCAATTAG 1169899 28 100.0 32 ............................ ATGAACGGCGGCGAGCATTACGCGTTCCGCGT 1169959 28 100.0 32 ............................ GGGCAGTGGCAAAAGTTATGAGTGCGTTGTAC 1170019 28 100.0 32 ............................ GGGCAGTGGCAAAAGTTATGAGTGCGTTGTAC 1170079 28 100.0 32 ............................ GGGCAGTGGCAAAAGTTATGAGTGCGTTGTAC 1170139 28 100.0 32 ............................ ATGAACGGCGGCGAGCATTACGCGTTCCGCGT 1170199 28 100.0 32 ............................ ATGAACGGCGGCGAGCATTACGCGTTCCGCGT 1170259 28 100.0 32 ............................ ATTGTGAATAACATTGTTTTGTTCATGTGATA 1170319 28 100.0 32 ............................ TTTTCTTGCTCGTACTTAGCTTTTTGATGCTC 1170379 28 100.0 32 ............................ TATGCGCTCGCGACCGTTAGTAACAGGTTGGT 1170439 28 100.0 32 ............................ TAACCGTAAAACGTTGGGGCTTATTTATGTGA 1170499 28 100.0 32 ............................ TTAAACCCCAACCATTTGGATCTGACTCTAAT 1170559 28 100.0 32 ............................ AATAAGTAATAGAGTTATTGTTCGCTGTCATG 1170619 28 100.0 32 ............................ TAAAAATTTATTGGGATCAGCCATAGGGCCAC 1170679 28 100.0 32 ............................ AAATCAACAAAGCACAAGCAAACTACGACAAA 1170739 28 100.0 32 ............................ ACTCGATGATTTTTTTAAATCTGACGCAACTT 1170799 28 100.0 32 ............................ TGTGGCTGCTGAAAAGGACGCCAGCAATTGTT 1170859 28 100.0 32 ............................ TGTCATAATCTTACGTTGTGTTGCTAGGTCTC 1170919 28 100.0 32 ............................ TGTTTTATCAGCTAAAGCCGTACAAAGTGCGC 1170979 28 100.0 32 ............................ ACTAAAAATAGTTAAAGCGCCTCTGCTGTTGT 1171039 28 100.0 32 ............................ TCTCCCCGATGAAATTTACGATTTTTTCAGCA 1171099 28 100.0 32 ............................ ACATAAGCACCTCTTAGATCGAAAAAGGGGCG 1171159 28 100.0 32 ............................ GTCAACAATCGACACTGTTGTCGGCGCGAACA 1171219 28 100.0 32 ............................ GGTATAAAGTCAAAGTCAAAAGTAAGGTTATT 1171279 28 100.0 32 ............................ TTCAGTCGGGTTTAACTCGTAGAGACGGTTTT 1171339 28 100.0 32 ............................ GAAAAATCAGCCTGTCTTTTATATGTATGAGC 1171399 28 96.4 32 ............G............... ATGCTTAAATAAACATTGAATCCATTCAGTTC 1171459 28 100.0 32 ............................ TAACGGCATTATCGGGTATAAAGTGGCCCGCT 1171519 28 100.0 32 ............................ TATAAACACTTGTTCTGCCCCTTCTTCATCCT 1171579 28 100.0 32 ............................ AAGAGCGTCAATCTTAACTAATTTTGACTGAT 1171639 28 100.0 32 ............................ ACCAAGTGCGCCAAGATAATCAACGTAAACAG 1171699 28 100.0 32 ............................ TTGAGATTTTCGAGGGTTTCATTTTCGTCTAG 1171759 28 100.0 32 ............................ TAACAACTGTTGCCCTTGGTATAGGGGGTATT 1171819 28 100.0 32 ............................ GCTACAATAAACACTCAATCGAACAATTACAT 1171879 28 100.0 32 ............................ TCAATCAGAAAAGGCTCTGAATCTGTTGAAAT 1171939 28 100.0 32 ............................ GCCTAGGCTCGGCACCGCCGAAACCAAAGAGG 1171999 28 100.0 32 ............................ GATAACTGGCCTCACCAACTCAGCAGGGGCAA 1172059 28 100.0 32 ............................ TGAATAACAATATTAAAACCATCAAATACTCG 1172119 28 100.0 32 ............................ ATTTTTAGCCATAAAAAACAATGTTGCTGCGG 1172179 28 100.0 32 ............................ GATAACCGACATTGCTAAATTCGAGCTGTTAT 1172239 28 100.0 32 ............................ GTCAGGCGTAGTTGCAATGGATGTTAAAATAG 1172299 28 100.0 32 ............................ TGCGCTATCGATGCGTTATACCAAAACGCCTG 1172359 28 100.0 32 ............................ GTAACAGCCATTACTAACTCTGTAATCATTTC 1172419 28 100.0 32 ............................ GATAAATCAGCAGGTGTACATAAACGATGGCC 1172479 28 100.0 32 ............................ TTAATTGTAAGTTATAAAACGTTGTTTCGTTT 1172539 28 100.0 32 ............................ TAAAAATTTATTGGGATCAGCCATAGGGCCAC 1172599 28 100.0 32 ............................ TAAAAATTTATTGGGATCAGCCATAGGGCCAC 1172659 28 100.0 32 ............................ TAAAAATTTATTGGGATCAGCCATAGGGCCAC 1172719 28 100.0 32 ............................ TAAAAATTTATTGGGATCAGCCATAGGGCCAC 1172779 28 100.0 32 ............................ TGTTCCATGCCGTCCACCTATCAATGGTGAGG 1172839 28 100.0 32 ............................ GGAATTGTTGAGCCAGGTCGATTTATCGACCA 1172899 28 100.0 32 ............................ ATTTGTTAATTCGTTTTGCTTGATAAACACAA 1172959 28 100.0 32 ............................ GTTAAAGGGCTAGGCTATGACGATTAAGACGA 1173019 28 100.0 32 ............................ ACAATGAATACATCTAGCATAACCATCTTTTC 1173079 28 100.0 32 ............................ GTAAACCGGATAACGCAGCTTTATTGACCTTT 1173139 28 100.0 32 ............................ TTATTTCTCTCAGAGAGAGGTGCTGATACATT 1173199 28 100.0 32 ............................ ATGATCCCAATCATAGCCGCGCCGCTAGCGAA 1173259 28 100.0 32 ............................ TGTAAGTTCTGTCTGGCCGTTTAACTTCTTGA 1173319 28 100.0 32 ............................ TGATTAACTCTGTTAGTTCAGATGGTAGGTGT 1173379 28 100.0 32 ............................ TCAGTATTAATGCTGGTTAATGTTTCAGTACG 1173439 28 100.0 32 ............................ GTTATTGAAGCCAGTTCTAAAGGCAATAATCC 1173499 28 100.0 32 ............................ TTTTCGTTATTAGTGCACGGCCACGCTTAAGC 1173559 28 100.0 32 ............................ TCAACAAGGCTGGTTGTGTTTGTATCTATCTG 1173619 28 100.0 32 ............................ GTTCAACTTCACTTTAATTGATGTTTGACCGT 1173679 28 100.0 32 ............................ TTGTTTCATAGCGATCACCGAAATTCTCTAAG 1173739 28 100.0 33 ............................ TGTAGGTATCAAGTCTTGGCTCTCTAGTGTTAT 1173800 28 100.0 32 ............................ TGATGCTAACATAGAGAAAGTGGCTTTAGCTG 1173860 28 96.4 32 ..........A................. AGAAGGTGCTAATTATGGCGTGATGGACTGGC 1173920 28 96.4 32 ..........A................. TTTTAACGCTTTACGCGCAATGCTTTTAGACT 1173980 28 92.9 0 ..........A...........T..... | ========== ====== ====== ====== ============================ ================================= ================== 98 28 99.8 32 GTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : AAGTTTGCTTAATGATCTTCAAGGATTGAATTGGTTAGGCCCGCTAAATGGTTATTGCAAACTAAGCGATATTTTAACTGTTCCAGAAAATACTCAACATCGTATTGTTTCTGAAAAAAGAAGTAATTTAAGTAAGGCAAAACTAAGGCGCTTAATTGTCAGAGGTAGTATCGATAAAGAAGGTGAAAAACGTTACAAGGTAAAGATGTTAAGTCAAGGTTTTAATAATCCTTACTTAGATTTGTTTAGCAGCTCAACAGAGCAAATACACCGCAAATTCTTTGAGTTTAGTGAACTCAAATCTGAACCTGTTAATGGTACATTCGATTCTTATGGGTTAAGTAAAGTAGCTACTATACCTTGGTTTTAACCTTTTAATTTTGCTCTTTAAAAATATGACATAAAAACAGTGAGTTACAGCAGGTCAAATTTTATTAGGTTAAATTTAAATTTTTAATCTAATTACCTGTTGTAACTTACTTTTTGCCTGATATTCTATT # Right flank : ATTAATTTTATCGGAACGTGCTTTAGCCCATGCCCATAGCGAAAAGCACCAAGCCAACCACACTGCATTGCAGTTGAATGAGTACGCCAAGTTAAGCGAGTGGATAAACGACCCCGCTACGCAAGTGCTGTGGGAGTTTGAGCGCAGCGAGCTGTTGTTTGTAAAACGACTCGGTGAGGGATCAATCAAGGTTGTTGTGCGTTATCAAGGGAAAAGGGTTGATCTGGACTTATTAATCAATGCGCTGAAAGTCAAAACCAAAACCATCGAGAGCGGTATAAATGGAGGCTTGTATGAAGTATGGCGGTAGGGCGAGAATCGAACTCACATCACTGTTAAACAGCCCCTTACCAATCGGGGTACACCACCGCCTGACTAATTATTGCCCACAACCAAGGTGATTGCAATATGACCACTCAAATTGAGATCCTTACCCAAGGCAATGCCGCTGAGGTACTGGCGGCCATTGCTGATAAATTTAATGATCTGAGTGAGCCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //