Array 1 554726-556388 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFRN01000002.1 Actinobacillus lignieresii strain NCTC4191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 554726 32 100.0 35 ................................ GTCCGTGTAGTTGTTGTTTTTAATTGACCCCACGA 554793 32 100.0 33 ................................ TAAATATCAATTTATAAATAATCGTTTAGATAA 554858 32 100.0 35 ................................ TAGCGTTTGTGGATATTCGCAAGGCGATTATGTAA 554925 32 100.0 34 ................................ AATTTGCGGCGCGCTCACATTGTCGTCTATGTCG 554991 32 100.0 33 ................................ GTTAAACCATTTAAGGCCCCAGATTTTTATCAG 555056 32 100.0 35 ................................ TCTAATCGCGCAATACCACAATAAATATTCTGATG 555123 32 100.0 34 ................................ TTTGTTAAGCCTTTCCACTCTCTGATACCATCAA 555189 32 100.0 35 ................................ AATATGCGGATACTTTTAACCGGTCGAAAGACGAT 555256 32 100.0 34 ................................ ACCTACACCGGAACCTTGTCCTTTACCATTACCT 555322 32 100.0 36 ................................ ACTATAAGGAACAAAATAATGACCGAACGTAAAAAA 555390 32 100.0 34 ................................ AATTTTAGAAGAGCAATTAAAGCAAACTGCTTTT 555456 32 100.0 34 ................................ ATTTCGCTTGAGTGGCAATGTGATGCGCATAGCG 555522 32 100.0 33 ................................ TTTGTCAATGCTTACGCTTACGATTTAAAGTAT 555587 32 100.0 33 ................................ GGCGTTAATCGCTCTTAAAATTTGATGAACTTG 555652 32 100.0 34 ................................ CATTTTTAACTCCTTTATTTATACTCGTGGTTAG 555718 32 100.0 36 ................................ CAACAGTTAGAACATTTCATGATGTTTTTGCAAGAA 555786 32 100.0 34 ................................ GCGTTCACGGTTTAAGAACATCATCACAACCGTA 555852 32 100.0 34 ................................ GCATTAAATATCATCTTATCTTTATTCTGTAATG 555918 32 100.0 36 ................................ CAAAAATACCAACCAAGCAATCTCACCACCACCCAA 555986 32 100.0 34 ................................ TTTTTATAAATAAAAAGAAGGAACAGCAAAATCA 556052 32 100.0 34 ................................ CACATAATGCGCTTGAAATCACGGCTGATTTAAA 556118 32 100.0 35 ................................ TCGCAACGTCCATTCTTTCACCAACTCAACAGCAA 556185 32 96.9 35 ..........T..................... ACTGGTGTTTCGCCTGTTACAGGGCTGTAAGCGGT 556252 32 96.9 34 ..........T..................... AAAACGTTTGAGTTTGCTCAAATTGCTAACTGTA 556318 32 71.9 7 ...A.T..T.T..TA........T.....TG. AGATTAT Deletion [556357] 556357 32 71.9 0 AT.A...T..T.AG......A...G....... | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 97.6 33 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : AGGAATTGGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCAAAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTACGGGCTCAGTATTCTGTGTTTGAGTGTGATGTTACGCCCGACCAGTGGGTAACACTGAAAAATAAATTATTGGCAACTTACAACCCTGATTGTGATAGTTTGCGTTTTTACCATTTAGGCAGTAAATGGCGTAATAAGGTCGAACATCACGGTGCAAAACCTGCAGTGGATATTTTTAAAGACACGTTAATTTTATAGATCGCTAACCGGTAGTTCTCATGAAAATGCTAGGAGGTTAGCGAATCTACATTATTCTTTAATAATCAAGGAATTAGAAAAAATAAGGTACAGTATATTGGCAATATGCTATACTTTTTCCCCACTCTCTACAAAGCGTTAGCGAATAAAAGGCTAAAAAGCCTGATATTTCAAAATGTTATCTAGTAGGGA # Right flank : CCCGAAAGCTGATCACGATGATGGACCCGATGGGATAGCCACCATTTGCGTGGCTATTTTACTTAATAATTAGTATTTTTTATTTTGTAAGCAATAATCATTTTGAGATAAAACTCACCACTTATTTGATCTTGGTTTTTGTTTTCTTTTCGTGTCAATGTTAAACTTTAATGAATATGATTTAACGACTTAGAGAAAAATAACAATGAGCGGTGCAGAATTATTAGTAAACGTGACGCCGAGTGAGACTCGGGTGGCGTTAGTTGAGAACGGATTGTTAAAGGAGCTTCATATTGAGCGTGAGGCGAAACGAGGGATTGTCGGAAATATTTATAAAGGGCGCGTGACACGAGTGTTGCCGGGAATGCAGTCGGCATTTGTCGATATCGGTTTGGAAAAAGCCGCATTTTTACACGCTTCCGATATTGTTTCGCATACGGAATGTGTCGATGAAAACGAGAAGAAACAGTTTGTCGTAAAAGATATTGCCGAGTTAGTGC # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1259661-1260468 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFRN01000002.1 Actinobacillus lignieresii strain NCTC4191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1259661 28 100.0 32 ............................ GTTTTAATCAAGCCTATCCCAACGGCTTTAAA 1259721 28 100.0 32 ............................ ATTTACGGGCATATTTCGTTTTTCGGCTAAGT 1259781 28 100.0 32 ............................ TGAAAACTAATCAAGGTAACGATAACGAACAA 1259841 28 100.0 32 ............................ GAAACCGTAAAAACACAAATTAAAAATGAGTT 1259901 28 100.0 32 ............................ AAACAGGAAAATGCGTTAAAAGCCGAAGTGCA 1259961 28 100.0 32 ............................ GCAAAAAGACAGCAAAACAGATATTGACAACC 1260021 28 100.0 32 ............................ TTATCCCTTGATGATATTAAGCAAAATGAAAA 1260081 28 100.0 32 ............................ GAAAGTACACAAGTCACGGTTACAGATAGTTT 1260141 28 100.0 32 ............................ TACTCGAAACCATTTCTTGTCAGCACCAGTTG 1260201 28 100.0 32 ............................ TGATTCAAAGCTGTTCTTAGCTTTATAATTTC 1260261 28 100.0 32 ............................ ACGAAATTGCAAAGTATATTGGTTTAGCCGGT 1260321 28 100.0 32 ............................ AATAGCCTCCGATTGGGGGGCTTTTATTATTT 1260381 28 100.0 32 ............................ GAGCAAGTGTTTGATATTCACGTGTGGAATGC 1260441 28 82.1 0 .......A.........T.......TCC | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : CACAAAATAAGAGGAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTTGGTTTCTGTAGCGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCACTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTGCAATTAGCACGGTTACAATTACTACTTCGAACTTGGAACAAGTTCGATTGGGAATATGCTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //