Array 1 49-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYY010000007.1 Corynebacterium diphtheriae isolate YEM0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. CAGTGCGGCCCGTCGATCCCACGCATGGGAAA 110 29 100.0 32 ............................. CCCAAACCGAGGCCCCCGCAGCTTCGAAGAAA 171 29 93.1 32 C............T............... ACTCTTCCTGCAAAGGCCTAGTCATGATGGGT 232 29 100.0 32 ............................. TGGAATCTGACTGAAAAGAAAGATCGCGGGGT 293 29 100.0 32 ............................. ATTTTGGCAAGCCGTTTAGCTGTGGGAATGAT 354 29 100.0 32 ............................. ATTGCCCGCGTCAATGCACTCCGCGGGTACTC 415 29 100.0 32 ............................. CGGCTATGGTTTGCGCGTTGTTCGTCGAGACG 476 29 100.0 32 ............................. CGGTTAATGCGATCGCAAATCGCTCAGGGATC 537 29 100.0 32 ............................. CAATCGCAAGCGCGGATTCATTCGGCGGCAAA 598 29 96.6 32 C............................ CAACACACAATTGACATAAATTCGATGGAATT 659 29 100.0 32 ............................. ATCTTTTGATCGAGGGGCGTAACGCCGCGGCT 720 29 100.0 32 ............................. CGGGCGAACGCGCCCTTGAGTTCGACGATCAG 781 29 96.6 32 C............................ TAACTTCTACTCCGCGCTGCTCACCGATGAGC 842 29 100.0 32 ............................. ATCCATGATCCATTCCAGGCCTCCATCAGAGG 903 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GGGCTCATCCCCGCTGGTGCGGGGAAAAC # Left flank : TTGGTGCGGGGAAAACACTCTTCCTGCAAAGGCCTAGTCATGATGGGTG # Right flank : CTCTTATCAAGCTGCATGTTTAGAGACAGTTAGAGCTTATTACATATAACTTTGTTTCAGCAATTTTTCTGCTTCATCTTTATTTCTACTGTTTTAGGATCAGCTATTCACCCAAATTTGCTTAGTCTTTTCTTCTAGCCATAGGCTGGCATTGTTCCCTGCGATCAGGGATGAGCCTTTTTAATATCTTTACAAGATTTACATAGGCATACTTCCCCGCACCAGCGGGGTTTCCTTTTATGCGTCTTCCTTTGGGCAGACCTCCACCTCTAATCCACGTTCATTGGTATAACGCACTAGGAATCGACCTAAACGAGCCTCTCCTCTTTCGTCGAAAAACAACGCAACTTGGCCTTTAAGCAAACCGGATCGTTGCCATTCTGGTGGTGTTTGTGCTTCGAGCGAATCAATAACGGCATTAAAATCCGAATCTCTACGTGTCATTTGGGCTGGCAGACGCACTGTGTTTCCAGCCAATGCCTCAGCTTCTTTCCAAGTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCATCCCCGCTGGTGCGGGGAAAAC # Alternate repeat : CGGCTCATCCCCGCTGGTGCGGGGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 111482-112668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYY010000006.1 Corynebacterium diphtheriae isolate YEM0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111482 28 100.0 33 ............................ AGACGGTCTAGCGTGGATACGCTTCCGCAAGAG 111543 28 100.0 33 ............................ CCACGGAAAGTTTGCCGCCGAATGAATCCGCGC 111604 28 100.0 33 ............................ TCATGATTGCAGACCTGGCAGACGAGCGCCAGA 111665 28 100.0 33 ............................ GCCGACACCAGCTGGTGTGATTATCTACTTGAG 111726 28 100.0 33 ............................ AATGACGCGCTAACCCTACTCGCAGCCCTTTTG 111787 28 100.0 33 ............................ TGCGAGCAAGGTCAGTGTCCCCTAAGGATACAG 111848 28 100.0 33 ............................ CGGGGTGTTTCTTTGCGAGGGTGGTATCAGTGG 111909 28 100.0 33 ............................ TCTGTCCACGCCCCTTCTGTAATTGTCGTGGCG 111970 28 100.0 33 ............................ CGAGGCCATGGTATTATTGACCTTGTCCTTATC 112031 28 100.0 33 ............................ TCCCATATCATATCCAAAATCCTCGAACGCCCG 112092 28 96.4 33 ..............G............. TCGCAAAAGCTCAGATCGTCGCAAATGTTCTGG 112153 28 96.4 33 ..............G............. GCACGGTGTGAGATAGCCACTGCGATACGTGGG 112214 28 96.4 33 ..............G............. GTATGTACCTGTCCGGCGCGTTTCACTGTTGAG 112275 28 96.4 33 ..............G............. CTCCATTTGTGAACGCAGCTCAAACATCATCGC 112336 28 96.4 33 ..............G............. TTCAGCCACGCTATTACAGTTTCAGGGGTGACG 112397 28 96.4 33 ..............G............. TTATGCTAAACCCCCTCGGTCTTGTGCTTGGCG 112458 28 96.4 33 ..............G............. TCATACCACGTGTAGAAACGGTAGCCTAGCAAC 112519 28 96.4 33 ..............G............. TCGTCGGCAAAGTCAATGTGCTTTCGATCGAAC 112580 28 96.4 33 ..............G............. GCTTCACATCGCCTATTACTGCCGCGATTGGTC 112641 28 92.9 0 ..........T...G............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GGCTCATCCCCGCTAGTGCGGGGAAAAC # Left flank : TGATCTTTCCCTTTTCGAGCAAGACGACGTCTCATCTTGTTGAACCATTCAAGAAAATCAAAAGGTTCCGCGTCCATGTCGATATCCATGGAATGGGCACGCCAGAAAATAGCCAGCAAAAGCCGCATCACAGCATAGTCTTGAGCCGGGGACTCCCCCTGAATATAGGCAACCTGCACCTCCCCCGCGAAAATATCTCGTATTCCAACTGAAATCTGGTTACCTTGAGTATCAAGAGCCAGAATCCAGCGGATCTCCAGTAACGAAGCCACCACCAACTCCTTCCTGATTGTTTTAAAACTCCCAACTTAGGAAGCACTTTCTCCACAGAATACACTGTATAGATATTAAAAGTTAGTTTTTTCAAAATTTTTTAGTAGAGCCATCATTTACTGATTTCTCTGAATGAAAAACACAGATCCCAAAACCCGTTCTTCAACAAAGATTCATCCACCCTGCTAGTGCAAGGAATCACGGCGGTCCAGTTCTCAAAGTCCCTG # Right flank : TTTGTGGCCTTTATAGCCAGACCCCACGGGCGAGGCTCATCCCCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCTAGTGCGGGGAAAAC # Alternate repeat : GGCTCATCCCCGCTGGTGCGGGGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //