Array 1 53317-53956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWG01000006.1 Escherichia coli strain AF7761 contig_0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53317 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 53379 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 53440 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 53501 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 53562 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 53623 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 53684 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 53745 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 53806 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 53867 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 53928 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79660-80970 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWG01000006.1 Escherichia coli strain AF7761 contig_0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79660 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 79721 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 79782 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 79843 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 79904 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 79965 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 80026 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 80087 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 80148 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 80209 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 80270 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 80332 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 80393 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 80454 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 80515 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 80576 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 80637 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 80698 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 80759 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 80820 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 80881 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 80942 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //