Array 1 55356-52240 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHI01000004.1 Moraxella catarrhalis strain COPD_M55 NODE_4_length_270021_cov_36.8769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 55355 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 55295 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 55235 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 55175 28 100.0 32 ............................ TGTCAAGTTTTGGCGGTTTTGGCTGATTTCAA 55115 28 100.0 32 ............................ GCTGGCGGACGGTGTTGATGTCTTCACGACCG 55055 28 100.0 32 ............................ GGACCATTTCCAGCCAACCTTGGCATGATGGC 54995 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 54935 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 54875 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 54815 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 54755 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 54695 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 54635 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 54575 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 54515 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 54454 28 100.0 31 ............................ ATCCTGCCACCACTGTATCCAGCCCATTGTC 54395 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 54335 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 54275 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 54215 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 54155 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 54095 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 54035 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 53975 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 53915 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 53855 28 85.7 0 .......................CTTC. - Deletion [53828] 53827 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 53772 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 53712 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 53651 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 53591 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 53530 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 53470 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 53410 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 53350 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 53289 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 53229 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 53169 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 53109 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 53048 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 52988 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 52928 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 52868 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 52808 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 52746 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 52687 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 52627 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 52567 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 52507 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 52447 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 52387 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 52327 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 52267 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================== ================== 53 28 99.2 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //