Array 1 560629-560993 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KK211212.1 Mannheimia granulomatis DSM 19156 Q357DRAFT_scaffold00001.1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    560629	    32	  93.8	    35	...............T...............T	ACGTCTCACCACTACAGATTGAGCAAGAGGGCTAT	
    560696	    32	 100.0	    35	................................	CCGACTCAAGGCGATAAATTGCGTGCAGCGATTGG	
    560763	    32	  90.6	    35	......G.....A...A...............	CACAAAAAAGGCGATACCGGCGTATCTTTAAAAGG	
    560830	    32	  87.5	    34	..T.T.G.......A.................	AGTGTAATGGTTGTAGCAATAAATATAAAAAACG 	
    560896	    32	  93.8	    34	......G.................A.......	CTGTAGCGGACGCAGGCAGTTCAATGATTACTTT 	
    560962	    32	  93.8	     0	......G.......A.................	|                                  	
==========	======	======	======	================================	===================================	==================
         6	    32	  93.2	    35	GCAGCCACCTTCGCGCGGCTGTGAGTTGAAAC	                                   	       

# Left flank :   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGACA
# Right flank :  CTGTTCCTTTCTTTTTATTTATAAAAAAATGGACGAAACTATTTTGCATTATTTTTTGTAGCAGCTTTTAGTATGGATTTCAAGATTCGGTAAGCGGTTAAATTTTTGCAAAAGTTTGTAAATCTGTTATACTTCTCTTGAGTTGGTTAGGCAATCGCTGGTTTATTGAAGCCCTTAGTGCTGTAAAGTAAAAGCCCGAAACGGGTGATAAGTGGGACAAATAAACGAGAGGAAAGTCCGAGCTACATAGGGCAGAGTGCCAGATAACGTCTGGGAGGCGTGAGCCTACGACTAGTGCAACAGAGAGCAAACCGCCGATGTACGTAAGTGCAGGTAAGGGTGAAAGGGTGCGGTAAGAGCGCACCGCGTGGGTGGCAACATTCCACGGCACGGTAAACTCCACTCGTAGCAAGACCAAATAGGAACTCAATCGGTGGCCCGCCGAGAGTTCGGGTAGGTTGCTTGAGCGTATGTGTGAATATACGCCTAGATGAATGATT

# Questionable array : NO	 Score: 3.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGCGCGGCTGTGAGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [6,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.30,-2.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [8.3-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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