Array 1 189992-189387 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIT01000004.1 Listeria monocytogenes strain FSL L7-0593 NODE_4_length_233316_cov_24.197291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 189991 29 100.0 36 ............................. TGATATCTGCTTCGGTCATGTTGACTTGTTTACCTT 189926 29 100.0 34 ............................. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 189863 29 100.0 35 ............................. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 189799 29 96.6 34 ..............T.............. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 189736 29 93.1 35 ..............T...A.......... GCGCTCTTATTCTTAGAATGCAATCCCGCGTCAAT 189672 29 93.1 36 ..............T...A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 189607 29 96.6 35 ..............T.............. TTATGACTTCATCACCTTCCATGTAACACTATTTT 189543 29 93.1 35 ..............T...........G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 189479 29 96.6 35 ......T...................... GGAATCACGGACAGTCAGGCGAAGATAACTAAACC 189415 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 94.8 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGAGGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCACGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 339349-341760 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIT01000002.1 Listeria monocytogenes strain FSL L7-0593 NODE_2_length_347132_cov_32.519906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 339349 36 100.0 30 .................................... ATTATTAGTGTTGGTGATGTCGCAACTGCT 339415 36 100.0 30 .................................... TAGGGTCGATGAAGTTATGGCTTTCATTTC 339481 36 100.0 30 .................................... TGAATTGATTAAGTAAAGTCATGTTAATTT 339547 36 100.0 30 .................................... TGGAGAATTTGAGTTGATGAAACAAGGATT 339613 36 100.0 30 .................................... TTGCGGGGCTATGCATACAGCAAGGAATTG 339679 36 100.0 30 .................................... AAACAGGCTGGCGAATGCGAGTAACGGTTG 339745 36 100.0 30 .................................... TCTATGTCCTTTTTCTGTATCAAATATCCA 339811 36 100.0 30 .................................... TGTTTTGGCATCTGTGTACTAAGTTTTGCA 339877 36 100.0 30 .................................... GTCAGCTACTTTTTGAAGTTTATCTAACGC 339943 36 100.0 30 .................................... ATTCCGCATCGTACCCCAGTTCATGAAGTG 340009 36 100.0 30 .................................... TAAATCTACCGAAACTTTTGAAGGAGCTAT 340075 36 100.0 30 .................................... CGTGGTAATTAGTTCGCGGTAATTGCTGCC 340141 36 100.0 30 .................................... GCTCTGTAAGGCAAATTGATACTGATTTTT 340207 36 100.0 30 .................................... ATGGCGGCGTTGACTCTGGAGCGACAGGGG 340273 36 100.0 30 .................................... ATATCTTTTATCGCTTTACCGTTGTCATCT 340339 36 100.0 30 .................................... TCACTAATGTGTCATGACTGTAATCTTTCC 340405 36 100.0 30 .................................... TCATTCTTTTTCAAAAGTTGGTGGGCAAGT 340471 36 100.0 30 .................................... TGCCATTGTCACAATGATCCCATTACTAAT 340537 36 100.0 30 .................................... GCAATACTTGTTTATGAGCACAACAAGTAT 340603 36 100.0 30 .................................... CAGCGGAACATCGGTGACTATTCATAATGA 340669 36 100.0 30 .................................... GTGATATAACGCTTTATGTAAATAATCAGA 340735 36 100.0 30 .................................... TTTAAAGAAAGTATATCCATCTTCGTCACG 340801 36 100.0 30 .................................... AAAGAGGATTTTCGACACGCGAAGAAGCTA 340867 36 100.0 30 .................................... ATTTAGAATGCGCAATTTGGACGAAAGAGA 340933 36 100.0 30 .................................... GTTTCGTTCTTTTTCTGTTCCTTTCCCCGA 340999 36 100.0 30 .................................... ACTTCAATTTCACACTAACGCATCATCCGT 341065 36 100.0 30 .................................... CCGCTAAATCATCTGGCTTCGTAAGTCAAA 341131 36 100.0 30 .................................... TGTGCCTTTCGGGCGTAATGCCTGGCACTG 341197 36 100.0 30 .................................... TTTTTTCTAAAAAAATTTATCATATCACCT 341263 36 100.0 30 .................................... TAGGAAACGAAAAACAAGGGAATGCTGTAG 341329 36 100.0 30 .................................... AGATGAATTAAAGAGTTTAAACATTGCAAT 341395 36 100.0 30 .................................... TGTTAAAGTAATCTATGCTACGCCAGCTGA 341461 36 100.0 30 .................................... TACGAATAATTAAATCAATATTAATGAACT 341527 36 100.0 30 .................................... AACCGCTTCTAAAAACCCAAATAGACACTC 341593 36 100.0 30 .................................... TAGGTTAACAGCCGTTTTAACGAAGCTTGA 341659 36 100.0 30 .................................... AAAAAGTATATGCCTAACATTCGACCTGTT 341725 36 83.3 0 ........................CA.C.A....CA | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAATCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAGGTTTTCTCGCCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTATAAGTGAAGGGACCTGCCGCTGAAAGGTGAGGGGCAAAATAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //