Array 1 30908-31450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPY010000024.1 Megasphaera elsdenii strain MSK.21.69 OOCCIPIO_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 30908 23 100.0 52 ....................... TAGGACGGTAGCCATCCGTTCCTAGACACGAGGTTTAACCGATAAGAACCAT 30983 23 100.0 50 ....................... ACCTCTAGTATTTTTTCATTCTTTTCAGCTCTTATTGTGATAAGAACCAT 31056 23 100.0 54 ....................... GACTCTATCGAACTTATCCATTAATTCGCTGGCTAATTCGTAGATAAGAACCAT 31133 23 100.0 48 ....................... GGGGCCTCGCCGCCTTTCAACCACAAAAGCTTTGCCGATAAGAACCAT 31204 23 100.0 52 ....................... TTTCGAGACTTTCGGCATCATCAACAATGTCTTTCCAATCGATAAGAACCAT 31279 23 100.0 52 ....................... TAGCCATCGAATCTGAAATAGTCATCGTTGGGGTTAAAATGATAAGAACCAT 31354 23 100.0 51 ....................... AAACCGACAGAAAAACAGTATGAAGCTTTACAGGGGGCTGATAAGAACCAT 31428 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================================== ================== 8 23 100.0 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : CTGGTCCAGATCACCGATACGGGTGCCCTGGAAGACATGGTCAAAAAGGTCATCGCCGCTAACCCGCAGTCCGTTGCCGACTACAAAGCCGGTAAGAAGAAAGCCATTGGCTTCCTCGTCGGTCAAATCATGAAAGAAACCAAAGGCCGGGCCAACCCTGGCGTCGTCAACCAGCTGTTGACGAAGAATTTGCAGTAAAAGACAGTTTGTAGTAAAAAGGGACTATCACATGAAAACGTAAAGCGATAGTCCCTTTTTCAATAAATTTATGATATAATATAAATTAGTTAGGTAATACCGTATTTATGCACCCAACTTGCTTTTTGAAAACATAAAAAGAATTATTCCGCCCCGCTGGCTTAAAAATCAGCGATAGGACCATTTTTGAAAATCATTTTCCACAAAAATGTGAAAAATGAGGAGAAAAGAAAATCCGCCCCGCAAAAGGCATTTTCGATGGCGCTATGAAGCCATTTATAAGGGGTGCGGATAAGAACCAT # Right flank : TCGCCGCTGAAGTGGTAAACTAAAATTGGACACGGAGGGGGTAATTTTTGGACATACGGTGT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 181179-180944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPY010000001.1 Megasphaera elsdenii strain MSK.21.69 OOCCIPIO_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 181178 32 100.0 38 ................................ TCGAATAATCCGGAAATACTTCGTCCCTTTATTCAGGC 181108 32 100.0 35 ................................ ACGGTTGGAAAGGTGTCAGCAACTGGCAAACCAAA 181041 32 96.9 34 ...........................A.... GACTGCCGAAGGAAATTACTCGCAATCCGTATAG 180975 32 75.0 0 ....T....T..G.G....TA.......G..C | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 93.0 36 CTCGCAATCCGTATACAGGGGCGAGTTGAAAT # Left flank : GGGAAATTCCAGAAAGCCGTAGGGCATACTAAGGGACCGGAAAAGCCCTTCAAGGGCGCCTCCCCGACACCACCGCGGCCCATCGCCAAGGCGGCCGTCCAGAAGCTGAATGCCCTCATGGACGAAGCGACAAAGAGCGAAACCGGACGCGTAAACATCCATTGGCAGGACGACGAACGCCGTTATACCAAGAAGACAGAAATGGAACGGACGGAAGAAGAACTCTACCAGGGCTGGTCCATGTAATCAAAGAAAAGAAACGCCCCGTCAAAGGATAGGGTAACAACATAATCGGGTTCGTTTGCTTCTCCCTAAGCTGAGAAGGGCCGGCGTCGAAATCACCGGTACCGCTCGGCAAAAGCCTGGCAAAAAATAAGTCCAGCAGCTCACCTCACGGGGCGCGAAGCCTCGCGGTGTACGCCTCCGGAACGGGCTTCCAAAAGAGGTTCGCGAAAAAGGCAGCACGAGGTCAGACAGGGCGGGGAAAGTATCCCAGGCCC # Right flank : AAACGATATGAAAAAAAGCGGCCGGCGAAACCAGCCGTCATCAACACACAAAATCTGTGTACGAAGATAAAAGATATTCTCCGGAAAGGAGGGAAGGGGAACCCCACGGGTCGCCCCGCATTATGCAACCGAAACGAAATCCGGGCATCCTGGCCCGGCTATGGGATGAAGGCATGATCAGTGCCGCAGACATCTGGAAAGGGCCGCGCAGTACGATTCCCTACCAGGTAAGAATATCCCATTTCTTGCGAAAGATCTGCCGGATCCGTTCGTCTTCTGGCGACATCGCCCAGCTTCTCTTTATCGACGGTGTCATCTCGGGCTCGCCGCAGGTCCCGGAACTCTTACAGGTAAAAGAAAAGAAGATCCATACCCTGCACACGATAGAAATAAAGACGGCCTGCATCGAAACACTGTACCGGACCATCCAGGACGTCTACGAAACCAGCGGGCAGGTCGGAGCTTTACGGGTCTACTTCTGCCGGATCCCAAAGAAAGGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATCCGTATACAGGGGCGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 14428-15357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPY010000045.1 Megasphaera elsdenii strain MSK.21.69 OOCCIPIO_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14428 28 100.0 33 ............................ CAGAATCGCTATTCTGGCGTTACCCCGCAAGGC 14489 28 100.0 32 ............................ ATTAAGAGCCGGCAGCGCATCAAATTTCTGCG 14549 28 100.0 32 ............................ AGCGCGAGATTGAAGATTTACGTAAAGCTGGC 14609 28 100.0 32 ............................ ATAGGTTTAAAAGACCCCATTACCATGCAGTT 14669 28 100.0 32 ............................ TTGTGCTTGTCTTCTTTTACTGTCATTCTTTC 14729 28 100.0 32 ............................ TGATTACGAAATTGGGCAAGGATATACTGGTA 14789 28 100.0 32 ............................ TTGACCGCCCATGCCGGAAAGCATGGGATTTA 14849 28 100.0 32 ............................ ATAATGACTATGTTCTGATTATTACTAATTAT 14909 28 100.0 32 ............................ TTGGATTGATGAACACAAAGACAACCCTATCT 14969 28 100.0 32 ............................ GCTTTCTTCCACTTCTTCCGAAGACGACGCTT 15029 28 100.0 32 ............................ CAAGATTTATCGCTGGTCAGTATGCCGTTTTT 15089 28 100.0 32 ............................ TCGACGGCGGCCGGCGCCTCCAGTCTCGCGTC 15149 28 100.0 32 ............................ AAGGACGTCGGCGGCTTCGTCGGGGGCTACCT 15209 28 100.0 33 ............................ ACAAAATCAAATTCCACGGTCTTCTTTTAAACG 15270 28 100.0 32 ............................ AGGTTAGCGTTAAGGATAGTCATTATGACAAC 15330 28 96.4 0 .........T.................. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGTTCCAAAATTTCCTGGTTAAGATTGTAGAGGGCCTTCTTATGCAGGAAATCCCGGCGTTGATTGATAACCTTTTCGTGAATTTTTGCTATTCGAAGTCTTTGCTTGTCACGATTACAGCTACTTTTTCCAGCCCAATTATGAAGCAATTATCTTTCTGAGGGCATCGAACCCTCAGAAAAACCTACAATTCATCTCATCACCTAAAGAAGCGGGAAACTTCTTGCAGAATCAGGTTAAAATTTTGAGAAAATAAAAAGATGCGGTATAATAAAAATTTCCCACGTCGGTCAATAAGACTCGCTATCCGTATATCCCGCTGGAGAGCATGAGCAATCACCATCGTTTCAGCCTGTTCCTGATTTCTGACCAAAGTTTTTACTATGTACCGGAAAGCCTTGTAAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGCATCAGGATATTCGCACAAAAGCCTACT # Right flank : AATTACCAAAGATGAAGCCATCCATAAAGCCGTAGATGCGGCCCGGACCTTCCTACAAAATGATGCCGAACGCCGAGCCTACATCAATCGTGAACTCGCCATCCTAGACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8971-9420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPY010000008.1 Megasphaera elsdenii strain MSK.21.69 OOCCIPIO_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8971 28 100.0 32 ............................ TTGTTGAGCTGGCTTTCATTTCCAACGATGAT 9031 28 100.0 33 ............................ CATATTCTCGATGCTTTCGGAATGCTCCGTGCT 9092 28 100.0 32 ............................ AGAATCAGATTGTTGACGCATTGGGCACTGTA 9152 28 100.0 32 ............................ GTTCGCATCGGAGTACATGCAACACCCAGACC 9212 28 100.0 32 ............................ AAATTATCGAGCCCATAAAAAATAGCCATTAT 9272 28 100.0 32 ............................ AAAAGGCCGGTCACAATGCTCATGGCCAAATT 9332 28 100.0 33 ............................ TCAAATGACGGCTACAAATGCTCAAGTACAGAC 9393 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCTGCAGCGTTTGAATCTGCCTGATGCACTGAAGCGTCTCATACCAGATTATGTGAGAATCAAAACTATTCGTCCAGTCCCCGTCAGAGCCTGTAAAGGCTTCGTGACATATAGCCGCTACCAGCCGGAAGCTACGGTTATGCAGAAAGCTAGACGCTATGCAAAGCGACACGGCATTTCAATAGAAGAAGCGCAAAAGCTTTTTCCCACGGCTGTCAGTAAGAATCGCTATCCGTATATCCAGTTGGAGAGCATGACCAATCACCATCGTTTCAGCCTGTTCATCCAGAAGCAGGAAGCCGTAGAGCAGCCATGCAACGGTTTTTCTGCCTATGGATTCAGCAAGAAATCGTCTGTTCCTGATTTCTGACCAAAGTTTTTACTATGTACCGGAAAGCCTTGTAAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGCATCAGGATATTCGCACAAAAGTCTACT # Right flank : ACCGCCCGTGATGGCCGCAGAGGTCGATTTCACCGCCCGGCGTGAACCAACGCAGATGCCAGTGATTGCCTTCTTTTACGGTAAAAGCCGTTTCGGATAAGCTGTTTTCCATGGCAATGTGTTGCATCAATTCGTCAGGCAGCCACTGGTCCAGGACGCAGACGGCAGCCGGGTTTCTTTTGAATATTTCCTTAGTAAAAGCGTTGACAATGTAACATTTTATAAAGCAAGAGTTCCTTTTTTAGTCATCGTATCACAGTCCGCTTAGACTGGCAACGATGGGCATGAAACATATAGATTTCGTAAATAAAAACAATTATTCGTTGATAAATTGTTGAATATGGAGTATAATAGGTTACATAAGAAGACGAAAAAAGGAGGCTTACTTATGAATATTGTAGTTTTGGTAAAGCAAGTTCCTGCAATTTCTGATATTGAAATCGCCAAAGATAACAACTTGGTCCGCGTCGGCGCACCGTCGATGCTCAACCCCGTTGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //