Array 1 21996-23792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKV01000006.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal676 sal676_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21996 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 22057 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 22118 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 22179 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 22240 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 22301 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGGCCAATGAA 22362 29 100.0 32 ............................. CAAAATGCCTCGGGTAGGGTAATGGGGTGAGT 22423 29 100.0 32 ............................. TCTCGCCGTTAATCGTTATGTCACCTGTACCG 22484 29 100.0 32 ............................. GGCATGCGCGCGGAGGCATACGCGATGTTTAG 22545 29 100.0 32 ............................. GGGAATAAGCACCCGGGCATTCCCGCAAAACC 22606 29 100.0 32 ............................. GGAATGCGGCTTATGCTGGTGCAAGCCAAGTA 22667 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 22728 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 22789 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 22850 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 22911 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 22972 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 23033 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 23094 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 23155 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 23216 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 23277 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 23338 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 23399 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 23460 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 23521 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 23582 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 23643 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 23704 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 23765 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31925-33235 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKV01000006.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal676 sal676_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31925 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 31986 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 32047 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 32108 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 32169 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 32230 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 32291 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 32352 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 32413 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 32474 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 32535 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 32596 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 32657 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 32718 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 32779 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 32840 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 32901 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 32962 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 33023 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 33084 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 33145 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 33206 29 100.0 0 ............................. | A [33233] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //