Array 1 548223-553494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076373.1 Shewanella indica strain Colony474 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 548223 28 100.0 32 ............................ AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNAG 548283 28 100.0 32 ............................ GCAGGGNNNNNNNNNNNNNNNNNNNNNNCCAA 548343 28 100.0 32 ............................ ACATAGNNNNNNNNNNNNNNNNNNNNNNGGCT 548403 28 100.0 32 ............................ TGCAGANNNNNNNNNNNNNNNNNNNNNNNTAC 548463 28 100.0 32 ............................ TCATNNNNNNNNNNNNNNNNNNNNNNNNNAAC 548523 28 100.0 32 ............................ TGGCGCNNNNNNNNNNNNNNNNNGCTGTGTGA 548583 28 100.0 32 ............................ TGTGTNNNNNNNNNNNNNNNNCGCATAAACGA 548643 28 100.0 32 ............................ GTANNNNNNNNNNNNNNNNNNNNNNNNNGACC 548703 28 100.0 32 ............................ TACAAGACNNNNNNNNNNNNNNNNNNTGGTGA 548763 28 100.0 32 ............................ TTTCTGNNNNNNNNNNNNNNNNNNNGGATTTC 548823 28 100.0 32 ............................ TCCCTNNNNNNNNNNNNNNNNNNNNNNNNTTG 548883 28 100.0 32 ............................ AAACAGCNNNNNNNNNNNNNNNNNNNCTACCC 548943 28 100.0 32 ............................ GAGTTGNNNNNNNNNNNNNNNNNNNNNGTGGA 549003 28 100.0 32 ............................ TGAACNNNNNNNNNNNNNNNNNNNNNNNAAGA 549063 28 100.0 32 ............................ TCGANNNNNNNNNNNNNNNNNNNNNNNNATAG 549123 28 100.0 32 ............................ ATCTTTCTCTNNNNNNNNNNNNNNNNNTGTTT 549183 28 100.0 32 ............................ AATATGNNNNNNNNNNNNNNNNNNNNNTTTGT 549243 28 100.0 32 ............................ GCCAAANNNNNNNNNNNNNNNNNNNNNNTACA 549303 28 100.0 32 ............................ ACAGCNNNNNNNNNNNNNNNNNNNNNNACATT 549363 28 100.0 32 ............................ ATAAGATANNNNNNNNNNNNNNNNNNNNNNNC 549423 28 96.4 32 ......................A..... TTNNNNNNNNNNNNNNNNNNNNNNNNNGCAAA 549483 28 100.0 32 ............................ TAACTGGCATCAAGCAAAAAGCAGCGTACACA 549543 28 100.0 32 ............................ TCTTNNNNNNNNNNNNNNNNNNNNNNNCCGCT 549603 28 100.0 32 ............................ AGCAANNNNNNNNNNNNNNNNNNNNNNNNGAG 549663 28 100.0 32 ............................ ATAGTANNNNNNNNNNNNNNNNNNNTTCACAG 549723 28 100.0 32 ............................ TTCTGNNNNNNNNNNNNNNNNNNNNNNNNNAC 549783 28 100.0 32 ............................ TGCCAGACNNNNNNNNNNNNNNNNNNNACTTT 549843 28 100.0 32 ............................ AAAACNNNNNNNNNNNNNNNNNNNNNNNATGC 549903 28 100.0 32 ............................ TCTACAGNNNNNNNNNNNNNNNNNNNNCTCAT 549963 28 100.0 32 ............................ ACTCNNNNNNNNNNNNNNNNNNNNNNNCCCAC 550023 28 100.0 32 ............................ TACTCAAACNNNNNNNNNNNNNNNNNNNTAGA 550083 28 100.0 32 ............................ GCAANNNNNNNNNNNNNNNNNNNNNAGCAGAT 550143 28 100.0 32 ............................ ATTAGNNNNNNNNNNNNNNNNNNNNNNATGTT 550203 28 100.0 32 ............................ TCATNNNNNNNNNNNNNNNNNNNNNNGCTATT 550263 28 100.0 32 ............................ GAATNNNNNNNNNNNNNNNNNNNNNNNCCAGA 550323 28 100.0 32 ............................ TTATANNNNNNNNNNNNNNNNNNNNNATATTC 550383 28 100.0 32 ............................ AATCTGNNNNNNNNNNNNNNNNNNNTCGTTTA 550443 28 100.0 32 ............................ ATGCTGTNNNNNNNNNNNNNNNNNNNNNGTAT 550503 28 100.0 32 ............................ CTTCATNNNNNNNNNNNNNNNNNNNNNNGCTA 550563 28 100.0 32 ............................ CTTCNNNNNNNNNNNNNNNNNNNNNNNNGCTA 550623 28 100.0 32 ............................ ATAANNNNNNNNNNNNNNNNNNNNNNNNNTAT 550683 28 100.0 32 ............................ TGCNNNNNNNNNNNNNNNNNNNNNNNCATCAC 550743 28 100.0 32 ............................ GTANNNNNNNNNNNNNNNNNNNNNNNNNTCAC 550803 28 100.0 32 ............................ TTTTGGNNNNNNNNNNNNNNNNNNNTGATAGC 550863 28 100.0 32 ............................ GACATNNNNNNNNNNNNNNNNNNNNNGAACAT 550923 28 100.0 32 ............................ AACNNNNNNNNNNNNNNNNNNNNNACACGCTA 550983 28 100.0 32 ............................ ACCTNNNNNNNNNNNNNNNNNNNNNNNACAGC 551043 28 100.0 32 ............................ TTGGTCTCGNNNNNNNNNNNNNNNNNNNNGAG 551103 28 100.0 32 ............................ ATCNNNNNNNNNNNNNNNNNNNNNNNGCTAAC 551163 28 100.0 32 ............................ TGTCAGATGCTNNNNNNNNNNNNNNNNNTTGG 551223 28 100.0 32 ............................ GTAANNNNNNNNNNNNNNNNNNNNNNNNTCAC 551283 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNATAGC 551343 28 100.0 32 ............................ GACATGGCNNNNNNNNNNNNNNNNNNNNACAT 551403 28 100.0 32 ............................ AACANNNNNNNNNNNNNNNNNNNNNNNNNCTA 551463 28 100.0 56 ............................ TGCTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 551547 28 100.0 32 ............................ TGCCNNNNNNNNNNNNNNNNNNNCTACATCAC 551607 28 100.0 32 ............................ GTAANNNNNNNNNNNNNNNNNNNNNNNTTCAC 551667 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNATAGC 551727 28 100.0 32 ............................ GACATGGCNNNNNNNNNNNNNNNNNNNNNCAT 551787 28 100.0 32 ............................ AANNNNNNNNNNNNNNNNNNNNNNNNNNNCTA 551847 28 100.0 32 ............................ ACCNNNNNNNNNNNNNNNNNNNNNNNNNCAGC 551907 28 100.0 32 ............................ TTGGTNNNNNNNNNNNNNNNNNNNNNNNNNAG 551967 28 100.0 32 ............................ ATCNNNNNNNNNNNNNNNNNNNNNNNGCTAAC 552027 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNATAGC 552087 28 100.0 32 ............................ GACATNNNNNNNNNNNNNNNNNNNNNNNNCAT 552147 28 100.0 32 ............................ AACACNNNNNNNNNNNNNNNNNNNNNNNNCTA 552207 28 100.0 32 ............................ TGCTGGCCGAGGCGCCGAGCAGCAGCGAAGCA 552267 28 100.0 32 ............................ AAGANNNNNNNNNNNNNNNNNNNNNNNATAAA 552327 28 100.0 32 ............................ TGCTTNNNNNNNNNNNNNNNNNNNNNNTGGTT 552387 28 100.0 32 ............................ AANNNNNNNNNNNNNNNNNNNNNNNNNNNGAT 552447 28 100.0 32 ............................ TGGATANNNNNNNNNNNNNNNNNNNNCCAACG 552507 28 100.0 32 ............................ GGATNNNNNNNNNNNNNNNNNNNNNNNNNAGG 552567 28 100.0 32 ............................ ACNNNNNNNNNNNNNNNNNNNNNNNNNNAGTT 552627 28 100.0 32 ............................ GCNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA 552687 28 100.0 32 ............................ ACTNNNNNNNNNNNNNNNNNNNNNNNNNNGTT 552747 28 100.0 32 ............................ GCGNNNNNNNNNNNNNNNNNNNNNNNNNNCAA 552807 28 100.0 32 ............................ ATAACNNNNNNNNNNNNNNNNNNNTTATCATT 552867 28 100.0 32 ............................ ATTATCANNNNNNNNNNNNNNNNNNNNGACGG 552927 28 100.0 32 ............................ TGATATGCCGNNNNNNNNNNNNNNNNNNNCAT 552987 28 100.0 32 ............................ ACCANNNNNNNNNNNNNNNNNNNNNNCTGTAT 553047 28 100.0 32 ............................ ATATAGATNNNNNNNNNNNNNNNNNNNACTTT 553107 28 100.0 32 ............................ ATCCANNNNNNNNNNNNNNNNNNNNNNGCCGG 553167 28 100.0 32 ............................ TTCATNNNNNNNNNNNNNNNNNNNNNCATACC 553227 28 100.0 32 ............................ TTACGCAGCANNNNNNNNNNNNNNACAACAAC 553287 28 100.0 32 ............................ AAATGTNNNNNNNNNNNNNNNNNNNNNGCCGA 553347 28 100.0 32 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGA 553407 28 100.0 32 ............................ TTTCTCAGGCNNNNNNNNNNNNNNNNCTTGGC 553467 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================== ================== 88 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTGTATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : ACTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTAGTTCACTGCCACCCAGACAGCTTAGAAAGTTCTTCTGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //