Array 1 64233-64928 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJS01000008.1 Clostridium sp. AM27-31LB AM27-31LB.Scaf8, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64233 36 100.0 30 .................................... TGCAAAAAGCGGCAGACAAATTGCAGTTTA 64299 36 100.0 30 .................................... AGATGAACAATATGCCAATAATCTGATAGA 64365 36 100.0 30 .................................... CGGCATTATTGCTATCCTGAATAGACATTA 64431 36 100.0 31 .................................... TGTACAAAATTTTGATGAGTATATGAATGAG 64498 36 100.0 30 .................................... GAGAGGAGTGGTAAAATATGGCAAAAGAAA 64564 36 100.0 30 .................................... TGTTTATGTTCACACCGTTATATTCTTTAT 64630 36 100.0 30 .................................... ATACAAACATATATTATTTATAACAATGTA 64696 36 100.0 30 .................................... TAATACATCGCTTGACTGTGCTGATACATA 64762 36 100.0 29 .................................... TTTGGTATAGTTCGACAACAGTCAATTTA 64827 36 100.0 30 .................................... GCGTTCTTTTTTATCACACTGTAAATTGTT 64893 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : ATGAAAAAAGATGGATGCAATATCAGGAACTCAATCAGGTGATACAAAATTTTTTCTATGATATGGAAATGGAATTTGATTTTGAATATGAAATTGATGAAAGTGTAGATATTAGTAAATTGGCAAAAGCTGTTGGAATACATATAGTTCAGGAGTATGACAACGATTTGGAGCGACTGATAAAATATTGTATTCTAGTGCGGGACTTATTAAAAATTCAGGTATTTATATTCTTTGACTTGAAAAGATATTTTTCTGAAAAGGAAATACAGGACTTTTATGCCGAAGCTATGAGTAGAAAATGGAATATTATTTTGTTTGAGAGCAGTCAATTCAGTATATTAGAAGAAGAAAAGTATTATATTTTAGACAAAGATTGCTGCTTTATCAGTTGAGTTATTTGCTCATATATGATATTATAAAATTATCTAAAGACAAATATGTTTGAGTACGGTATATACATTTTATGCTGGTGATGGCATTTCATTTTTGAATTTGAG # Right flank : CAGGTCAGATTTACATTAACGGTATTAACATACTACTTATTAATTTCTGATGAATGAATGTCGTACTTGTAGAAATGAAGAAGCCCGTTAAAGGGCATTATTTAAAAAAGTAACGCAAATAATGATAAAATCGCCATTTACAGCAGTTAAGTTGCGATTTTTTTGTATGTTATTAACAAAGAAATCTATATAAATTAAGGCATAATGCAGAAGGAAATAAAAATCTAATATTACAAAATTTTTTATAATGTACTAAATCATATAAAATATTTCTAACAATATTCACATATTAAAAAGATAAATCGTATGTTATCATTATTTCACTTAAGAAAAAACAAGCATTTTCATCTGTTTATCAGATGATAAAGTTTAATTATGAACATATATTTCTGAAACAAATACTGAAAGAAGGTGGAACAAGTGGCTAATGAAATACAAAATAAAGGAAAATCTAAAAAGAATAGAAAAACTGATGAAGAAGTGATACAGATAATAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 697261-697496 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJS01000001.1 Clostridium sp. AM27-31LB AM27-31LB.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 697261 37 100.0 29 ..................................... AAAAATCAGTTAGTAGGCAAGGATGAACA 697327 37 100.0 30 ..................................... GTATGAATTTTGCAGAATTTATACAAGTAT 697394 37 100.0 30 ..................................... AAATGCTATTAAATAAAAGAATCCCCAGAG 697461 36 83.8 0 ......................G......GG.-..TA | ========== ====== ====== ====== ===================================== ============================== ================== 4 37 96.0 30 GTTTTAGGTGTATGTAATTTTGAATGGTAACACAACT # Left flank : GATACATATTGAATTTATGAGTATAATGGAGGAGTTCCCGTTTGAAATATTGTGCAAAAAAGATATTTCTATTTTAGATATATTAAAAATATATGGCGTTAGGATTAAGGCAAATGTTGATGAAAAGATAATTGAAAAGCTTTTTAGAATAGTTGAATTAGTTCAGTGCCTAGATTTGGCAAAATTGATAATCCTTGTAAATGTGAAACAATACTTAGATTCAGATGAAATAGTTGAATTTTATAAGTATTGTGTGTATAATAATGTAAAGTTGCTATTACTTGAAAGAGGTTCAGAGGTTTCTCCTTTGGAAAGAGAGAGAGTACTTTTTGTTGACGAGAACTTTGATGAATTTTTTATACAATAATATGTAAGTGGAGGTGAATTTATATAAATGATATGTTACTGTTTGAAATTGAATTTTTGATAAATTCAGAATATATGGTTGAAATCTCATTTTTGTAAGGAAAATGAATGGTAATAAAAAATGTAAAATTGAG # Right flank : AGTGCTGTGATAAACTATAATTCACATTTTCTACGCTATTAAAAGGTCTGTATTATCAAATCATATAATACAGACCTTTTTTATAAATCATATTTTGCGATTGCTCACGAATTAAAACTCTCAATCCTACATTCGTGTATTTTGGTTTTCTTATCATAATTAATTTCGATAAGCAATATATTTCTGATAAATTACAACCGATACTATAATATGCGGTAAGCATATCTGCCGTTATGGATTTGCCAAAAATTCAGCCTACAAAAACCTCTTAAGTACCTCCAGCACTCCATTTTCCCAATAAGGGGCACAGGTATGCTTTGCTGCCGCAATAACCTCCGGTCTTGCATTTGATACGGCATAACTTTCGCCTGCGCCTTTTAACATCTCGGTATCGTTGAGATTATCACCGAAACAGCAGACTTCATCAGGTGTGATATTGTATTTGTCCATTAAAAATGAAACGGCAGTCCATTTGCTTATGCCGCTGTGATTACAGTCAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGTGTATGTAATTTTGAATGGTAACACAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 55367-54821 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJS01000009.1 Clostridium sp. AM27-31LB AM27-31LB.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 55366 37 100.0 35 ..................................... ATATAATTGTTTTCCTCCTTTTATTTTGCATCCGT 55294 37 100.0 37 ..................................... ATCTTTATTTCCTATTGTAATAAATGTATTCATAGTA 55220 37 100.0 36 ..................................... TTCTCTAATATAGTAGTTACGATTTTATCTACATCT 55147 37 100.0 37 ..................................... AGTCTGATTTCTGGTGCTTTCAACCGTGATACTTTGT 55073 37 100.0 35 ..................................... ATCACCCTTTGAGTCATTGGGTTGTATTTGTAATA 55001 37 100.0 34 ..................................... TTCAAGAAGATTGTTCATTCCTTCAGCAGATTTT 54930 37 91.9 36 ...T................T..............A. AATAATAGCCATTTTGCTTAATTCCGACCTTTTTCG 54857 37 67.6 0 ...........GA..A..T.T.G.....G...ATTAA | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 94.9 36 GTAGAAATGGAAGAAGCCCGATAAAGGGCATTGACTC # Left flank : GAACTGTTACTTGGAAAAATTGGAAATTGAAAGTTTTTATATACATTTATAACATGATATGTTAAAATAAAGTTATAAATCCATTTTTACAACTAAGGTCTAAAAATGACAAAAAAATAGTAACAGTTCAGCCTTTTATTTCTTACATTCATAAACCTGCCAGTAAACTGTCAGTCGCTGCCATGCAGCTTTTGTTTATTTACGCGAAAGCAAAGTGAGGATGGAACAAATAAATTTGTTCCATCTGAGCGTGCTCGCGAGGGCTTTGCCCTCATTTCAGAAATGAAAGGCTATTCTACCATAAAAAGATAATCAACAATACAATGAACAAGCTCGTTGTATTGTCAATTATCTTTTTATGCTGAACTGTTACAAAATATGAACAAAGTGTAAAGAGACACAAAAACAGCAAAAAATAAGCAGATTTTGATATTGTCAGACAATTACTTGCAAAATCGAGTCCGCAAATGCTTCATTTTAGGGCGTTCCCAGAGGGGAGC # Right flank : AAAAGTAACGCAAACAATGATAAAATCGCCATTTAAAGCAGTTAAGTGGTGATTTTTTTGTATGTTATTAACAAAGAAATCTATATAAAATAATGCATATTGCATAAGAAAATAAAAAATCTAATATTACAAAATTGTTTATAGTGAACCAAATCATATAAAATATTTCTGACAATATTCACATATTAAAAAGATAAATCGTATGTTATCATTATTTCACTTAAGAAAAACAAGCATTTTCATCTGTTTATCAGATGATAAAGTTCAGTTATGAACATATATTTCTGAAGCAAATACTGAAAGAAGGTGGAACAAGTGTCTAATAAAATACAAAATAAAGGAAAATCTAAAAAGAATAGAAAAACTGATGAAGAAGTGATACAGATAATAAGAAATCTTCGTTTGATTGACGATGTATTATTTGAGAAGTTTATGGAAGATGCAGCGGCGTGCGAAGAGTTATTACAGGTAATACTTGAAAATTCACGGCTGAAAGTTAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGGAAGAAGCCCGATAAAGGGCATTGACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //