Array 1 137606-134997 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNK01000014.1 Veillonella parvula strain MCC755 NODE_15_length_286361_cov_122.543404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================== ================== 137605 33 81.8 44 AAC.G.C...G...................... TACAAAGCGAGGTGGAAAATCTAAGAAAAGAAAACAATAAATTG 137528 33 93.9 44 ............C...................T GCGATTAATACCGCAGAAACAATGGCAAATGAGTTTGATGACGG A [137517] 137450 33 90.9 44 ...T........T.......C............ CAAATGCTTACTGGTGGTGCACTGGCGAGGCGTTAATTAAATGG A [137439] 137372 33 93.9 44 ............C.............G...... TAGCGGAATATGCAAATAAATTGAAAGACAATCCAGATATGCGG A [137361] 137294 33 90.9 45 ...........AG...A................ GTGAAACAAAAGGAAGAATTGAACGAAGCCAAGACTACAATCGGT C [137281] 137215 33 87.9 43 ...........CCTC.................. TCAAAATAACCGCATGGCGCATGGATACCAAGATATGCTAAAG A [137204] 137138 33 90.9 46 ...........CC........G........... GTAACAGACTTTGAAAACACTATCGATGTTACAGATAGCGTGGTCG A [137127] 137058 33 93.9 42 ..............T.....C............ GAAAAACATCTATTTAAAGTATAACATATCGTTAACCCGAAG A [137042] 136982 33 90.9 45 ..A........CC.................... CATGACATGGATTGACGCAGGAATGCATTTAAGCTTAGCTGCAGG A [136971] 136903 33 93.9 45 ............C.............G...... AAGGTGGGTACAAGTCGTACAGCTCTATTAGAACAAAACGTTGAG A [136892] 136824 33 93.9 44 ...........CC.................... TAGCAAGAGTTTCTTGTGAGTATGTGAAGGTGGATAAAAAGGTG A [136813] 136746 33 90.9 43 ............C.......C...A........ GATTGACCTCGTACAAATGCATTGTATCAATCGGGGCTTTTAG A [136735] 136669 33 87.9 44 ..........T.C.......C...A........ GAAAGCCTTGAAATCCAACGATAGTGAAAAAGCGTTGCTGAAAG A [136658] 136591 33 90.9 43 ............T.......C...A........ ACGCAAGCTTGAGGAAAAGGAACAGTTACCAGTGGTAGACCGG A [136580] 136514 33 90.9 45 ......C.....C..A................. GATATTGGGCATGTCCTCACTCATGCCGAGGCTGCCGATAATATT A [136503] 136435 33 90.9 45 ............TG..................T AACTTGTCGGACGCAGAGAAAATCAAGCACTACGTAGAGAAACTG A [136424] 136356 33 97.0 44 .........T....................... TGTTAGCTGAATTTCTAGCTAGTCAAAAGAAATAATAACTCTTG T [136342] 136278 33 100.0 41 ................................. TTGTATGATGTTATTTCTTATGAAGAATTAAATAATATCTG T [136264] 136203 33 100.0 45 ................................. ATTGCTACGACTATAATAATATTATTGATATGAAATATAAAATTG T [136189] 136124 33 100.0 43 ................................. CAAAAATCTTTCAAGAAACGATTTGAAAGAATTCATAGACTAG T [136110] 136047 33 100.0 44 ................................. CATATGGAATAGAATTTTATTGATATCTCAATCTCTAAAAGATG T [136033] 135969 33 100.0 43 ................................. AGAGGATGATAAACGCTTGAAAGCACTATCTAAAAACGACTCG T [135955] 135892 33 100.0 44 ................................. AATCTATGGCCAATGCGTAGCTTCGTGAGCCCTTTCACAATCCG T [135878] 135814 33 100.0 43 ................................. GAATTACAAGCTTTGTTATATTCCTTGTGATGGAACATTACAG T [135800] 135737 33 100.0 45 ................................. ACCTTGTTGATGCAATGCTTTTACCATAAAGGAACCAGAATAAGG T [135723] 135658 33 100.0 45 ................................. CGGAGGGCGTTTTATATGGAATATACATATAGAACAATTCAAGAG T [135644] 135579 33 100.0 46 ................................. AGAATGGAACGCTACAGATTTAATTGAAAAACTTATAGGGGTTGGG T [135565] 135499 33 100.0 46 ................................. TAAAGAGGTAAATGTTATGAAAAAGTTCATCAATGAAAAAATGTTG T [135485] 135419 33 100.0 43 ................................. TATAATTAAAAATATCTTTTATAGAATCTAATGGGGTAATTGG T [135405] 135342 33 100.0 42 ................................. CTAGTAAGTAGATAGTCAAATGCTACACCTGTTGGCTCATAG T [135328] 135266 33 100.0 44 ................................. CTTTAGAACATTCCTTGTCCATTCGCTAGGTTGGGATGTGAAAG T [135252] 135188 33 100.0 45 ................................. CATCTTGCCCAATTATGAATCGTTACATTAAAGATGCCATCAAAG T [135174] 135109 33 100.0 45 ................................. CTCAAAACAGCATTCGCTAATGCTCGTAAATTACAAGAAAAAGAG T [135095] 135030 33 100.0 0 ................................. | T [135016] ========== ====== ====== ====== ================================= ============================================== ================== 34 33 95.6 44 TTTCCGTCCCCTAAGGGGATTATTTAATTTAAC # Left flank : CGGTAACTCTTTATCAAACTTCTGTGTAGAGGTATTTTCACCTTCCTCAAGATCTCGACGATCTACAGCTGCAGCAACATTATCCGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAGCTGCACTAAGCTCTTTCCCGTGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGCTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACGACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATCACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTATTGACTTCATTATATATTCATTTCTGTTTAAAACCAATAGAAAAACCATCCGATTTATACAAAAATATAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTGTACTTATATGAGTTTTTGACATAAG # Right flank : CCCTGTCTTTGAAACAACAGCTATTTACTAGTTCCAAAATGCAAAAAACGGCGGAGATTGTAAATCCACCCCAAAAGGCACTTTAGCGAGCTAAAATAATGCCATTTAACCGCGCCACTATCACAACGGCGCAGATTTAGTTTTGCAAAGATTAAATCTAGGTCTATTATAGCACATCACTAACATTAATGAAAAACATATGAAAATAGAGCCACCTTATATAAGGTAGCTCTATTGAGGTGCCATATGTAACTTATTTTCAATAGTTCATCTGCTCCCGCAGTTCTATTTATTTTCTTATACGCCTATCCTCCTTTTCCAGATTTCTCTCCACCCTCCTATTTCTACTTTCACCGTCCAACGAGTTATCTCGTTAGGTCTCTCCAGGCGATAAATAGTTCGGCCACGACTTGAGGGTTTTGGCTGAGTTTGATGCGGGCTAGCATTTTTCGCACGTAGTTGCAGTGTTCTAGCATCGCTTCATTCAGTTTGTGTTTGAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCTAAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 148849-147496 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNK01000014.1 Veillonella parvula strain MCC755 NODE_15_length_286361_cov_122.543404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 148848 33 88.2 44 ...TT.A.......-................... TAGCAGCTACATCTTTACTATTAACAATCGGTATTGTGTATGCG 148771 33 91.2 45 ...........-.G.......C............ ATGTGTTTAAACCAACAGCAATGCAAATTGAAAGAAATACTATTG T [148757] 148692 33 94.1 40 ...........-.A.................... CTCAGGTATAGTTGATAATCCACCACCAGTATTTAGAGTG T [148678] 148618 33 91.2 47 ...........-.G............T....... TAACTGCACTAGTAGGGTTCCTTGCATTATGGATTGATAAGGTTGTT T [148604] 148537 34 91.2 43 ..........T..C.A.................. TAATGTAGCTGTCCTGGGCATATGAGATTAATTTACATACAGG 148460 34 91.2 45 ............CC..A................. CTTATATTCTCAAAGAGGAGACAACGAAAATGAGAAATCTAAAAA 148381 34 94.1 44 C............C.................... GCAAAGCTAAAGATGTACTATCTCCTGAAGAGCAGAAGATGTTG 148303 34 97.1 43 .............C.................... CGTTCTTCATCAAATAGGTTGGATTGCGCACGTTTTCCTTCAA 148226 34 100.0 44 .................................. CTATCCAACAACAACAAGCCATCTTATTAAAGAATGCGGAAAAA 148148 34 100.0 43 .................................. CAAGTGAAAAATCTCAATCTACTGAAAAGCCTAAAACTACTAA 148071 34 100.0 45 .................................. CATGCATACTTTAGAAAATTAATCATTAAATTAAGTGAGTGAGGA 147992 34 100.0 44 .................................. CGAAAGTGAGATTTATCATGACTAAGAAATCTACTACTATTGAC 147914 34 100.0 42 .................................. AAGGAAGTATCTATATAGTAACAATTGTACAAGTATTAAACC 147838 34 100.0 45 .................................. CATCATGATTATGATATACACATGTTTGTTAGCGGTGAGAAATAC 147759 34 100.0 42 .................................. CAGCACTATGATGACATCATAGACAAGAGCATTACCATAGAC 147683 34 100.0 44 .................................. CTTAACGTCATTTGTTTTTTTAATGCTTGTGTAATTGCTTTAAC 147605 34 100.0 42 .................................. CTCGAAAAAGAAAAAGAAGATAAGGCGAAAAGTAAAAACGAC 147529 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 18 34 96.6 44 TTTCCGTCCCCATTAGGGGATTATTTAATTTAAC # Left flank : GTACACTAGGCATCATCGTTCCGCCACTATGCGGTATTATCTTAGCGGACTTTTACCTGGTTCATCGCGGAAAATATATCGATTACAACAAAGCGACTTTCAAAAAATGGAATCTAGTTCCATGGATCACATGGGCCATCGCATTGGTCTGTGTTAAATTCATACCATTCGGACTGGCTTCGCTGAACGGGATTGTAATCGGTGCCCTACTGTACACAGTCATTACGTATATTGTTAAACCTAATGTTGTTAGTGAAAGTAAAGGGTGATTATCATGGCAATTTATAAACTATCTGCTATACTAGGCACAATCATTATGGGCATCGGATCCTTTATCACCTGTCTAGCCACTAATGAAAGCACCATTACCCTTGGTAACGGCATGCTCGTGGTGAGCATTATTATGATGGGATTTGGATACTCGAAATGGCAGCCGTAAAAAATTAATGTTTATATAAAATAAGAAAAAGCACTATCTACAAATAATAAGATAGTGCTTT # Right flank : CCCTGTCTTTGAAACAACAGATATTTAATGGCTCCAAAATGCAAAAAACGGCGGAGATTACAAATTGATCCTAAAAGGCACTTTAGCAAACTAAAATAACACCGTTAAACCGCACCACTATAACAACGGCGCAGATTTAATTTCTCAGGAGTTAAATTCTAGACCCATTATATCATATAAGAAAATAGATAATACAATAATAGAATCATCAATACAAAACATCAAGTCTTGAAATACTTTTACCAATATTAATGATTCTATTATTGTTAATTACACTTCTACATCGTAACAGTATTAATCGAGAGTAACTGTTTATATTTAAAGAATGATGCAGTCTTGTTCCTTACGTTCTCCAATACCCCAAGTATAGATATTTATAATGTCATCAAGGACATAGACTCGTAAGGAGTCCTCTATAGGGTTAATCATCTTACTAGCTCGCCGCATCATAGCATCATATTGCTTCTTATTAAGCAAAGCTTCAAACGCAGACTTTTGGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCATTAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //