Array 1 17883-16726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWNS01000033.1 Neisseria meningitidis strain Nm440530 Scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17882 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17816 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17750 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17684 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17618 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 17552 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17486 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17420 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17354 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17288 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17222 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17156 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17091 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17025 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16959 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16893 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16827 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16761 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //