Array 1 1977183-1976419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043405.1 Streptococcus ratti strain ATCC 31377 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1977182 36 100.0 29 .................................... ATCAAAACGCTAACGCTGCTATCTATGCG 1977117 36 100.0 30 .................................... CCCTGGCATTGAAAATAGTTTTAAAAAGAT 1977051 36 100.0 30 .................................... TGATTTTGATACATTTATCGACGTTTTTGG 1976985 36 100.0 30 .................................... TATTGCTTTTGACCTAACAGGCAACTATGT 1976919 36 100.0 30 .................................... GTGCACTATATCATCAAGGATAGCTACTGG 1976853 36 100.0 30 .................................... TGATACAAAAGATAGTTTTCAAGGCTTGCC 1976787 36 100.0 30 .................................... TAACAAGCGGATAGCAGTTTGAATGTCTTT 1976721 36 100.0 31 .................................... ACAATAGCTGTTGCAATTGTGCCAAAGGCTG 1976654 36 100.0 31 .................................... CTTCAATTACTGGCTTATCGGCTTTTGGCGC 1976587 36 100.0 31 .................................... ACAATAGCTGTTGCAATTGTGCCAAAGGCTG 1976520 36 100.0 30 .................................... TACAACCTGATGATCTTACCCGTGGGGATA 1976454 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAGAAAAAGGGATACTGGGTTGAATTTCCTGAATTTGGTGGTGGTACACAAGGGGAAGATTTGGAAGAAGCTATGAAGAATGCTCGTCAAATGTTAGAAAGTGTACTGGCATCTTATTTAGATGAGGGAATGAAATTACCTAGTCCAAGTGACATAAGGGAAGTGTCTGTCGATGATGGTTTCGTTACCATGATTCAAGCTGATCCTAGTCCTTATCTTAGAAATAACAAAGCCATTCGGAAAAATGTGACGGTTCCCGAATGGTTAGTGCGATTGGCAGATCGTGATCAAGTGAATTATTCTGAAGTACTAACAAAGGCTTTGGAAAAGAAATTACAATTATAAATAAAAGTAGGAAGTGCTGGAAATGTTGATTTTTAGCGCTTTTTAAGGTATAATATAAATAATTAAAACTTTAAAAAGGAATCATTTCGAAGCTGAAATCTGGCTGAGATGAATAGCGCGATTACGAAATTTCGGGACGAAAATTGGTCCACGAG # Right flank : CTAATTTTGAAATTGGTTTGTCGGTCTTTGATCTTTTAGGTTAAGTCTACAGTGGGAGAGAACAGATTGAAAGAGAATCTACGGATTTTCTTTTTTTAGTTTAAGCATTGAAAAAACTGCAGCGGATTCACTGCAGTTTTTATGATGCGGCTTTTAGTATGTTTCGCGTCCTTTGGCGCAAGCAAATACCAGCTGTATAATGGATAGTTTACTTGTCAGACAGGATAGGCGTCAGCTAATAACAGTGCCGATAATTTCTATGTCGTCATCTTCTTGCAAAATAATATCGTCATAATGGGGATTAATCGAAATCAGCCTGATCTCATGGTCTTTTTTGTATAGTTTTTTGAGATAAGCTTCATTGTTGACAATGACAACGATAAATTGACCGTGGTAAATTTCCTGTGTTTTCTTTACAAAGATGACTTCACCGTTATAAAACAGAGGTTCCATACTGTTGCCGTTTACCCTGAGAGCAATATCATGTTTAGGAATAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2081523-2081009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043405.1 Streptococcus ratti strain ATCC 31377 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 2081522 24 100.0 37 ........................ TAAAAACCCTTGATTTTCAAGAGTTTTTATTTTGTTT 2081461 24 100.0 37 ........................ TGTGCCGTCAGCGTCGACTTGCCAGATGTAACCGTTT 2081400 24 100.0 38 ........................ TTAGATAGGATAGATGCCGTATAGCTAAGTATCAGTTT 2081338 24 100.0 37 ........................ TGGCCGTGTTGCAGATGTTCCAACTGATGCGGTGTTT 2081277 24 100.0 38 ........................ TATGGGGCAGGCGCTATCTTTACAGTGAACACTGGTTT 2081215 24 100.0 37 ........................ TAAAATGAGCAATAAAACAGAGGTTTATATGATGTTT 2081154 24 100.0 37 ........................ TGATAATGTTTCTAATGGTGATTTACTGATGAGGTTT 2081093 24 100.0 37 ........................ TTTATCCAAAGACGTTTTGTGACCTTGTTTTTTGTTT 2081032 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 9 24 100.0 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATAAGAATAAAATCATCGAAATTGGCGCTATTAAGGTTTCTGGATCAGAGTTGAAAGAGTGTCATTACTTAGTACAGTGTGATAATACACTGCCAAAAGAAATTGTGCAGCTGACAGGTATCACAGATGATATGTTACAGCAAGAAGGTGTAGATATTGAGTTAGCGCTTAATGGATTGTTGAATTTCATTGGCAGTCTAGATATTGTAGGATATGGTGTTAATTTTGATTTGACATTTATTAATACTAAATTAACCGATCTTGGTTATCCTGTCATAACGAATTCAGTGTATGATTTGATGAAGTATGTGAAATCAGAGAAATTATTTTTAGAGAATTATAAATTACAGACGGTGCTGAAATCATACGGGATAGATGAGAAAGTTCCTCACAGAGCTCTTCTTGATGCAAGACTCATTCTAGACTTGTCGACAAAAGTGAATAAATTTTTGACTAGGATCAATCAGAAGTAGCGATTTTATTGGGATCTTTTAGTGTTT # Right flank : TGTCCTATTATGAACTACATAAAGATAGTCTTCAAGACGTACGCCTGGTATCAATGGATGGGGTAAAAGAAGCGGTTGTGGGTAGGCATTTAGCGCAACTGCAATCAGAACTCTCTGGTCGCCCTCTGCGATGGAGTCATGATCAATTAGCTGAAGGATTACAGACAGCGATTGATAATAATTTCTTTACAGATGGAAAACATGCGGATTGGATTACTCTTGCAGTAGATAATGATACTGGTGGGCATAATTTTATTGACTCTCTGAGAGAAAAGGGAGCTACTATTAATGAGGATTTACCAGATTTACAACCAGGGCAAGATAAGACAGACTGGAACGATGCTTTAAAACAACATAGAATTTTGGGTCTGTCTGATGGTAGGGAAACTTATCAAACAAGGAGTGAAGAACAGGAAGTGCAACTAAAAGATATCAGTACATTACATTCTGAATGGAAACAGGAATTAAAAAATAAGGTGACCCAACATTTAGGGCACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //