Array 1 11-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_POPP01000046.1 Streptococcus suis strain 207 SS_0207_Contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 11 32 100.0 33 ................................ TTCTTTGTTTGCTAATTCAACTGCATATTCCAA 76 32 100.0 33 ................................ ATTTATATGTCCACATCTCAGCGGATGAGATTA 141 32 100.0 33 ................................ CAACTACATCTACTTGGTTTGTTGAAATGACGT 206 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 4 32 100.0 33 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : ACGGAAAAGGG # Right flank : TTCCCGGCACGCTAAACATCGGCGGGAGTGCCTTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21664-20837 **** Predicted by CRISPRDetect 2.4 *** >NZ_POPP01000503.1 Streptococcus suis strain 207 SS_0207_Contig503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21663 36 100.0 30 .................................... AATTTTTGGCTGATGATGTTGCTTGAGAAA 21597 36 100.0 30 .................................... TAGAAATGGAAAATTCGCAAAAGAAATATA 21531 36 100.0 30 .................................... AAAAGCTTATTCAGCATATCGTGTCAAAGG 21465 36 100.0 30 .................................... CTATGGTTTTCTTTTCGTCTATCATCGTAT 21399 36 100.0 29 .................................... ATATTCAATTTACTAAATTCAAAAATCCA 21334 36 100.0 30 .................................... AATTATTGTGTATCATTCAAATCAAGCACA 21268 36 100.0 30 .................................... GAATTGCTAAAGAACAGCTAGACGTGCTAT 21202 36 100.0 30 .................................... TACTTTTTGGGGACATCAGCAAAACACATA 21136 36 100.0 30 .................................... TCTTTTAATTGTTTCAAACAGTCACCCCCT 21070 36 100.0 30 .................................... CGAAAACGTCGTTCCACATCCAGCTGTCTA 21004 36 100.0 30 .................................... AATAAAGCGAAACAAAAAACGAAGATAAAA 20938 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 20872 35 83.3 0 .......................T..T.-....TCA | T [20848] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //