Array 1 1047392-1049494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059045.1 Cronobacter sakazakii strain 5563_17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1047392 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 1047453 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 1047514 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 1047575 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 1047636 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 1047697 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 1047758 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 1047819 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 1047880 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 1047941 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 1048002 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 1048063 29 96.6 32 .C........................... GCACCGCCAAATTATGGCTATTCTCTGGTCTT 1048124 29 96.6 32 .C........................... TCCTCAATCCGTAAATGGCTGGTTTAAAAGAG 1048185 29 100.0 32 ............................. CGCTCGCAACTTACGCGTTTGAGGATTACTCA 1048246 29 100.0 32 ............................. TCAATGAACGAGTCGTCGCGAAGTTCTCTCAT 1048307 29 100.0 32 ............................. GCGTCTGGGATAACACAACGAGGTTGCCTGTA 1048368 29 96.6 32 .........................G... CAATGCGTCGTGTGCAATCAGCACAAGAGCGG 1048429 29 96.6 32 .........................G... CAATGCGTCGTGTGCAATCAGCACAAGAGCGG 1048490 29 100.0 32 ............................. AGATTTACGAAATAGACCCGATTCAGTGCATC 1048551 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 1048612 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 1048673 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 1048734 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 1048796 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 1048857 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 1048918 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 1048979 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 1049040 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 1049101 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 1049162 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 1049223 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 1049284 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 1049345 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 1049406 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 1049467 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1075712-1077632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059045.1 Cronobacter sakazakii strain 5563_17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1075712 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 1075773 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 1075834 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 1075895 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 1075956 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 1076017 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 1076078 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 1076139 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 1076200 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 1076261 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 1076322 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 1076383 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 1076444 29 100.0 32 ............................. TTAAGAGTGCGCAACCTTTATAAAATAATTGC 1076505 29 93.1 32 .A.............A............. ATCACTTTCGCTTTACACGTGGTGACGATCCG 1076566 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 1076627 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 1076688 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 1076749 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 1076810 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 1076871 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 1076932 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 1076993 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 1077054 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 1077115 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 1077176 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 1077237 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 1077298 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 1077359 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 1077420 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 1077482 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 1077543 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 1077604 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //