Array 1 9100-4787 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNST01000011.1 Xanthomonas translucens strain XT-Rocky flattened_line_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 9099 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 9035 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 8968 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 8904 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 8836 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 8771 31 100.0 33 ............................... CCACAAACTACTCGATGTACTCGGACAATGCAG 8707 31 100.0 34 ............................... ACCTTCTGGACCCGGGCCAGCACGTTGTGCCGGC 8642 31 100.0 34 ............................... TGGTGCAGACGCGCAACCCGCCAGTGTGCCCCGC 8577 31 100.0 34 ............................... CTCGGCCGCCGGCCCGTCTTGCGTTGGCCTTGGT 8512 31 100.0 35 ............................... AAGAACGCCAAGACGCTGACGATTCCGCTGTACTT 8446 31 100.0 36 ............................... ATCGCGGGTCATGTTGCAATTATTGACCATGCTTTG 8379 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 8312 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 8246 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 8180 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 8113 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 8046 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 7979 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 7912 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 7847 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 7782 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 7717 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 7650 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 7585 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 7521 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 7453 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 7388 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 7322 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 7255 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 7190 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 7125 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 7059 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 6995 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 6929 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 6863 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 6798 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 6730 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 6664 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 6597 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 6531 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 6464 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 6398 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 6330 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 6263 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 6197 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 6131 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 6065 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 6000 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 5933 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 5869 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 5805 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 5739 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 5674 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 5609 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 5543 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 5478 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 5412 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 5346 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 5280 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 5213 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [5200] 5147 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 5080 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 5014 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 4948 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 4884 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 4818 31 87.1 0 ......CG.......C.........C..... | G [4791] ========== ====== ====== ====== =============================== ===================================== ================== 66 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //