Array 1 81666-80970 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXC01000007.1 Neisseria subflava strain C2008002238 C2008002238_S21_ctg_1453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 81665 35 83.3 30 AAA.....AT.-........................ AGTCGCTCCGCTTTGTCCACTTCCGCCAGT 81600 36 100.0 30 .................................... TCATTTTTTTTGTCATATATGGATACTACT 81534 36 100.0 30 .................................... AAGATAAATTTACTGTTTCTGTCTTGGCAT 81468 36 100.0 31 .................................... TCTTGGAGCTGTTTCTGTTCTTGTGACGGCG 81401 36 100.0 30 .................................... TAAATTTGACAAAATCTTCCTCCACTTGTA 81335 36 100.0 30 .................................... TTTTCCAAACCAAAATAAACAGGAATTGCA 81269 36 100.0 30 .................................... GAATTTCCGCCAGAAATACAAGCTACAGGA 81203 36 100.0 30 .................................... CCGTGGCGCAATGACACGATATAGCCCAAG 81137 36 100.0 30 .................................... TCAATTCAGGATTGCCATCATCGACAATAC 81071 36 100.0 30 .................................... CGTCAAGCGTGTGGGAGCTTATATCAAACA 81005 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGCCAAACAACGGCTATATACCTAACCGTTCATCTCCTTACCGCACATTTCAAAAACGCCAACCACTTTACAGCATTCGCTGGCATGAGCCCGCAACAGAAAAAATCAGGGACAAGCGTCAACGGCAAAGAAAAGCTGACAAGGTATGGCAACAGAAAACTACGCGGCGCCCTCTTCATGGCCGCCATGGTAGCCATGCGTCAAAATTACTTTCCCGACTTCACCAAAAGACTGCAAAAAGCCAAAAAGCCCAAGATGGTTATTATCTGCGCCCTGATGAGAAAGCTACTCGTCATTGCCTATCATCTGCACAAAAACCAAACCGACTTCGATCCGAGTCGGTACAAACAAGCGTAAAGAGCCTTAACAAAAACGCAAAAGCTACGCGGATAATCGTAAAATATTCGCGCGGCCAATTGCATTCTGTAAAAATTGCAAAACTAAATAAACAGGAAAAACAATAATATACAAAAATGACAGTAAATTACTATTGCATGTT # Right flank : ACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGTAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGTTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 2 89770-89535 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXC01000007.1 Neisseria subflava strain C2008002238 C2008002238_S21_ctg_1453, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89769 36 88.9 30 T...G..GC........................... AAACAGCGACTGATTATGTTGTGTCTCAGA T [89763] 89702 36 100.0 30 .................................... GGCTTTAAGGGCTTCCTCTTCGTCTTCAGA 89636 36 100.0 30 .................................... GCGGCATATTGTTGGCAGCCTCTTTTATCA 89570 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGCAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : AATTCGTTTTTCCTTGTACGGATTAAACGGGTTGTAGCTCCCTTATATATTTCGCTCCATCGAGGGGCGCAATTTTTTACACTTCTTATAGAACTTTAAGCCCCTTTAACTCTAGCCAGTGAAGGGGCTTTCTTATGTGCATCGCATTTTATACAGTCAATTCAGATAGTTTTTACAGTTTTGAAGAACAAAGAGCCGTTATCGTCCGCGTTTTCAAAGATGATGAGCTTGTAGAAACCGTTTCATTTCCTATTACAAATCCCAAACAAAAATATAAAACAGAAAAACAGGCTGAAGAGTATGGCCGTCTTGCTGTCCGTTCTATTTTGAACCAATGGGAGGCAGACGCATGAGAGCCGAAGAGAGAGCAGAAACGGCGGGGGCGTGTGGGGGCGCGCCTTGCGCGCCGCAAACGGCCACGCCGTTGAATGCCCCCCTAGGCTAATAGGGGGGGAGCAAAAAAAACCTAATCCACAAAGTGGGGAGCAAACCGAAAAAAC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 426594-428427 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXC01000001.1 Neisseria subflava strain C2008002238 C2008002238_S21_ctg_1441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 426594 32 90.6 35 ...........CG...T............... TACCATGCCGCATTCAAATCCCGCAAGGCAGAAGT 426661 32 90.6 34 ...........CG...T............... AAGAATTAACCGAACTTCGCCACCACGGCCATAC 426727 32 90.6 35 ...........CG...T............... TTAGTATAGGGTTTATACATGCGCAATATATCCCC 426794 32 100.0 35 ................................ TTAATATAGGGTTTATACATGCGCAATATATCCCC 426861 32 100.0 34 ................................ ACATAGCCCGCAAACACATTTTTTAAACATTTCC 426927 32 100.0 35 ................................ TCGCCAAACAGTGCGTCCATCGCGCCCAATCGGTC 426994 32 100.0 34 ................................ GGAATCCGCTGATTGATGCGGTGTGTAATGCCGT 427060 32 100.0 35 ................................ GTTGAAAAATCCTGCCAGCTTCTCAAGCTCGTTGA 427127 32 100.0 34 ................................ ATCCGTGCCGCATCCATGCTTGCTGAAGAAATTT 427193 32 100.0 34 ................................ ATTGCTTCTGCCGCGATAGTCTCGCCGTCCGAAT 427259 32 100.0 36 ................................ GCCATTCGTTGCTCCCAAAAAAAAGCCGCCCCACAA 427327 32 100.0 34 ................................ CGTTTAAAAAAGAATGATAAAGAAATTCTCGATT 427393 32 100.0 35 ................................ ATTATGGCGGTCAGCGAGAAACAATGCTGGTTGAA 427460 32 100.0 34 ................................ TGCTGCCGGTCGGCCGCAACCTCTACAAAGAGTA 427526 32 100.0 35 ................................ ACTAAAACAGGATTCCATGTTGATGGTGTTATGTA 427593 32 100.0 35 ................................ AAAACATGGGCAGAATTTAAAACATGGGTAGATGC 427660 32 100.0 35 ................................ CATCACAAAATGCAACGGAAAGGATTTGCAACAGG 427727 32 100.0 33 ................................ ACATAGCCCGCAAACACATTTTTTAAACATTTC 427792 32 100.0 38 ................................ GGGGGCGGCTAAAGATGAAGAGAAGCGTTTTTAACTGA 427862 32 100.0 35 ................................ GGGGCGGAGGAAGGCAGATTTTGCAGTTTCTCCAC 427929 32 100.0 35 ................................ GTCATTTAGAGGTAAAGCCAGATATAAAAATGGAC 427996 32 96.9 35 ...........C.................... TTGTGATTCCTCTAAAGAACAACCGCAAAAGACAA 428063 32 90.6 36 T..........C.........A.......... TTTTAATTGTTGCAGCAAATTAACCAGCTTATAGAG 428131 32 93.8 34 T..........C.................... TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAAC 428197 32 90.6 33 ......A....CG................... CGCAAGGGCGATATGATCGTGATTTCCAACCGT 428262 32 90.6 35 ......A....C...T................ CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTTG 428329 32 78.1 35 A.....A....CG..TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCCG 428396 32 78.1 0 T....A.....CG..A...........C...T | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 96.1 35 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAATCTACAACCCTGAAACCGACAGTCTGCGTTTTTACCATTTAGGCAGCAAATGGAGGCGGAAAGTAGAACACCACGGCGCAAGACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATACGGACGCAACGGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATTGGTGCTGTGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCC # Right flank : TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCCTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGTATCTGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGTCCATTCCGTCCAATATGAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTATAAAGCGATTCGGTAAATGTTGGCGAAATGGTGGCGGAGTTTGCCCGAGTTTTTGGGGCACAGGAAATTACCTGTTAAACGGGACAGATTCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGCATGGCGATCCTTCAGGTGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //