Array 1 449-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOG01000035.1 Bifidobacterium italicum strain Rab10A Contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 448 36 100.0 28 .................................... CGTAAGTGGATCGCCCCATTTGTGAAGG 384 36 100.0 28 .................................... GCTTTTCGAGCTTGGCTTCGACCTTGGT 320 36 100.0 28 .................................... TTCGCGGTTTTGATGGCGTCGGTGAGCT 256 36 100.0 28 .................................... GTCGCCTGAGTGCGCTAGTCCGGTTATG 192 36 100.0 28 .................................... TTCGTCATTATCCAATGGCGGAGTGCTT 128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 100.0 28 CAAGTCTATCAGGAAGGGAAGAAGCTAATTTCCAGC # Left flank : AGTTCGATAAGAATGGTTTAACAATTCCTAGCTCCATAGATGCATTCGCGCAACAGTTCGGTATCTATTGTGAGTCAAAAGATCGCATGTTGTCGGTTCCTGTATTTGGAGGCGATGATGAAGAAAGATGAGGAGAGCGGCGGCATGTGGTGTCTGGTGATGTTTGATCTTCCAGTAGGGACTAGACAACAGCGGCATGAAGCTGTGGTATTCCGAAATCTGCTCTTGGATATGGGGTATACAATGGTGCAGTTCTCAGTGTATGCACGGTATACCCCTACGCAATCGGGTAATCGATCGACGGTGAAAATGATTAAGGAGAATCTGCCGTCGGGAGGAAAAGTGAGAGTGCTGCATGTCAGTGATCATCAGTGGTCACGTGCACTGCGATATGTCAGCGAGGAGCCGGAAACTGACTCGGAAACGCCAGAGGTCCTGACGGTTTTCTGATTGTCTGTTTCCTAGGAAATGTTGAAATTCTCCCCTTCCTGAGCGGCTAT # Right flank : CTTGAGCCTGGGCGATGCCGACCTGTTCGCAAGTCTATCAGGAAGGGAAGANGCTAATTTCTGGTAAAGCTATCACGACCAAGGTGAATAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAGGAAGGGAAGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 31328-29223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOG01000039.1 Bifidobacterium italicum strain Rab10A Contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 31327 29 100.0 32 ............................. ACGCCCCGCACACCGGGCGTCGTTCGCCGACG 31266 29 100.0 32 ............................. CGCGACGCGCTTCAAGGCCACCGGCGTCCAGC 31205 29 100.0 32 ............................. TCGATCCACGATTGCTCGATGTTGCTGTAGGT 31144 29 100.0 32 ............................. TCTACGAACAATTCGTGAAGAAAACCATGAGC 31083 29 100.0 32 ............................. AGAAGCGCGGTCAAGGTCGCTTCACTTGGCCG 31022 29 100.0 32 ............................. GCAAGACGGCTAGGGGAGGCAAACGCCGTGGT 30961 29 100.0 32 ............................. TCGCGCGGAAGTCCACAAGCTGCGGCTTGTAC 30900 29 100.0 32 ............................. TGGTCACGGCTCAGCGTGCTCGTTGACATCGT G [30883] 30838 29 100.0 32 ............................. AGCGTGCGGCAGGACCGCGTGCTATCCGGGTA 30777 29 100.0 32 ............................. TCGGCATCGGGCATCGCGTACTTCTGGGCGTA 30716 29 100.0 32 ............................. TGTCCACGCTGGGCGGCGTCATCGGACAGACC 30655 29 100.0 32 ............................. GTACAATTGCATGCTCTCATTGTTCTGCAAAC 30594 29 100.0 32 ............................. AACTCGACACGCCGTAAACGTTAATCAGGTTG 30533 29 100.0 32 ............................. GTGTAGCCCATCGCGCCCGCGCTCTTGTCGGA 30472 29 100.0 32 ............................. GAAACGCGGCCGTTTCGATTTCATTGCAACCG 30411 29 100.0 32 ............................. ACGTACTCGCCGGACGGAGTGTCCAGCAGATG 30350 29 100.0 32 ............................. ACGGGGGCGATGTGGACACGCCAGCGCGCGGA 30289 29 100.0 32 ............................. ACCGCCGAGACGGCCATCAGCGCCGGCGACTG 30228 29 100.0 32 ............................. GCCCCACGTTCTCACCCAATTGCGCGGGCACT 30167 29 100.0 32 ............................. CAGTCGATCACAAACAATTTCGCGTCGAGTGG 30106 29 100.0 32 ............................. GCCGCCGCCGACCGCGCCATGGTACTGTTCGC 30045 29 96.6 32 .................A........... CGTTCCAGCTGGGCACGGGCCGCCGCCATATC 29984 29 96.6 32 .........A................... AGATGGTCCGCGCAGTTGTTGATGGGGGTGAT 29923 29 96.6 32 ............................T AGGCGCCGTGCTCGCGGATGCTTGGGAGCACG 29862 29 100.0 32 ............................. AGCGGCGTGTACGGTTCATCGTGCGGGATGCT 29801 29 100.0 32 ............................. TCCTTGCGTGTGGCGCGCGGGATGACGAAACG 29740 29 100.0 32 ............................. GCGCCGTGTTCGCTGCCGGCGACGGACATGAG 29679 29 100.0 32 ............................. GAGTACGCGGAGGCACACGGACTCAAGGTCTC 29618 29 96.6 32 ..............T.............. GGTTGGCGGGGGACGGGGCGCATGACGTGCAG 29557 29 100.0 32 ............................. ATTTTCTCGAAACTACCGCCGAGCTGCTCGAG 29496 29 100.0 32 ............................. CCAACAATGGATTTTCGCAAGTGCGCGCCGAT 29435 29 100.0 32 ............................. GCCCCAGCGATACCCGGCCGGCGCCCCAGCCC 29374 29 96.6 34 ............................G AACAGACGTCGCTTGTTTGAGTTAGCCACGTCGT 29311 28 89.7 32 T...C................-....... CTGAGCGGGTTCATGAAGGCGTTCACCGATTT C [29303] 29250 28 82.8 0 .......T..........T...CA.-... | ========== ====== ====== ====== ============================= ================================== ================== 35 29 98.7 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : AGTGAGTGGGGAGGGCCGCAATGGTAGTTATCGTGTTGACCGCTTGCCCGACCGGTTTACGCGGCGATGTGAGCAGATGGCTGTTGGAAATCGCGCCGGGCGTGTTCGTGGGACATGTCACTGCTCGTGTTCGTGATCGGTTATGGGAACGCATAGTGGACACACTGAAGGATGGACGAGCCATCATGGTCTTCTCTGCGCGCAACGAACAGCATATGGATTTTCGCGTGTTCAGATCGGATTGGCAGCCGGTCGACTGTGACGGTCTGCAGCTGATCAAGCATCCTAATGAGTCTGATGAGCAGGAGTCCCTCGAGACATTTGCCGGCAAACCGCGACGCGGCTGGAGCAATGCTGCGAAATACCGACGTGCGCGACGATATGGGAAGAGACCGGGAGAATGATACAGCGGAGGAGGAGATGCGAAGTGCGCCGTGAAAAGTGAACGAAAATGCTTCTCGCTGATCAATGATATGTTGGAAACACAGGGATTTCTTAGT # Right flank : AGGTGCGGTTGCCGAAACGGCGGGGCGGATGCAGGAGTCGGCTCAAGTCGTCTCTGTCGAAGAGAGGAGCATACCCGTTTCCGATGCATTCGCAAATACGGAAGAGGATGACGGGAACCATGGTGGGCAGAATCCGACCGTGGTTTCGGTCCCTGCTGTCCAAACCGGGCCCGTTGCCGCCGCGGTCGCGCCGGCCGGACCTTCGACGCCCGCTGCGCAGCCCGCTGTGCAGGTTGATGGGAAGGTCGCGTTGACCCGTCTCCTGCAACCTCTTCATGATGAAGGTCTTCTGGACAAATCCATGACCGCGCAGAAGGCCAATCCGATTCTGGCCGCCAAAGGGCTGATCATCCATACGGAGCAGGGCTACTGGATTCCCACTGACTACGGCAGGAATCTGGGCGTCGAGGCCAGAAGCAATGAACGAGGCGCCACTTGGCCGGTCTATCCACCCGAGCTGGGCATCCTGGTCCTCGGCATGCTGCTATAGGGACCTGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43405-42985 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOG01000039.1 Bifidobacterium italicum strain Rab10A Contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 43404 36 100.0 28 .................................... CGTAAGTGGATCGCCCCATTTGTGAAGG 43340 36 100.0 28 .................................... GCTTTTCGAGCTTGGCTTCGACCTTGGT 43276 36 100.0 28 .................................... TTCGCGGTTTTGATGGCGTCGGTGAGCT 43212 36 100.0 28 .................................... GTCGCCTGAGTGCGCTAGTCCGGTTATG 43148 36 100.0 28 .................................... TTCGTCATTATCCAATGGCGGAGTGCTT 43084 36 100.0 28 .................................... TTGAGCCTGGGCGATGCCGACCTGTTCG 43020 36 91.7 0 ................................TG.T | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 98.8 28 CAAGTCTATCAGGAAGGGAAGAAGCTAATTTCCAGC # Left flank : TCCTAGGAAATGTTGAAATTCTCCCCTTCCTGAGCGGCTA # Right flank : AAAGCTATCACGACCAAGGTGAATAAGAAATAAAGTGGTCGGAAGAATCTAAAACAGAATTCGCAAGGAGATGCATCTGACGCTGACGGAGGGGATTCCAATGATGTAGAGCTAACCAATGGGTAGAGGTTCGATACCGTACACGACGCATGTCATGAGATAGGATTGTAGCGGATAATGTGCTCGATCGGGCTGAGGAAGGAAGCAGACGATGCATACGACGTTGGACCTGAGCCGGTATGACGCTGTAACGGCGTATGACGATCTGCCTCGTTCATCGGTGGCTCAGGTAGATTATCTGCCGACTCCGCAGGCCGTAGCATGTCGCGTGCGTGAGATAATCGATAGCCGCCGTTTGGATGAGGAGCAGGTGGCCGAGGAAGCGCATGTCAACGTACGGGTAGTGCGCTCATTGTATGAGCATGGGTTGGCGAACCTGCGTGATGCGCGCCGCGTGTTCGCTGTGTTGGGCATTCATGTGCATGAATACCCGATCGAGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAGGAAGGGAAGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //