Array 1 954164-951849 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTZ01000001.1 Bifidobacterium pseudocatenulatum strain AF26-1 AF26-1.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 954163 33 100.0 33 ................................. TCGTACGATACAATGGCGTTTTCACGCGCTTGC 954097 33 100.0 34 ................................. ACTGTCATGGTGTCAAGCCCCGTGGCCTGTCTGA 954030 33 100.0 34 ................................. GATTTCCCATCCCACACAGACAATAGGGAATATG 953963 33 100.0 33 ................................. ACCGATAATCAACCCAAAATCGGCCTTGACCTG 953897 33 100.0 36 ................................. CTTGGTGGCATCGGCAGTGCCATCATGGGCGTGTTT 953828 33 100.0 33 ................................. TCCAGCATGAAATCGCTGGATTGAAGACTTCGA 953762 33 100.0 34 ................................. ATGCGCGACTCGTGGCTTACCGCCCATTCGGTGA 953695 33 100.0 34 ................................. GACGAACGTATGGACGAGCTCTGCCGGGACACGG 953628 33 100.0 35 ................................. AGAGGCTGGAACGTCGCCAGTGGCGCGCCAACCAA 953560 33 100.0 35 ................................. AGCAGCACGTCGCGCAACGGCGCGCATATGCTGGT 953492 33 100.0 32 ................................. GTCATGACACGTTTGGCATTGTCTGCACTCTG 953427 33 100.0 34 ................................. AGGTTGACAGTCCATAACGGACTGAAACATTTTT 953360 33 100.0 33 ................................. CGGAACCCGATCCGCCGGCGCAATGCGGGATGA 953294 33 100.0 33 ................................. GATCGCAAGGGCGACTGGTCCCAGCGTGTGGCC 953228 33 100.0 37 ................................. GTGAGGAAATGCGCATGGCATCCAAGGGAATGCCGAG 953158 33 100.0 35 ................................. AACATCCCCGACCGGTACCGGAATCTGCGCAAACT 953090 33 100.0 33 ................................. AGTAGGCTATAGGCGGCCTGATAGCGTGTGCCA 953024 33 100.0 34 ................................. CAACCGTGGCCCAACACTACACCCTACTTGTTGG 952957 33 100.0 33 ................................. GGGGACGCTCTTTCCGTACGGAAATTGGGAGCG 952891 33 100.0 34 ................................. AAGGTCACGAGCCTGCAAAGCCTCGTGGACACCT 952824 33 100.0 33 ................................. GATTGTAACCGTTGTCGGGAGCGTGGGTTTTCC 952758 33 100.0 34 ................................. GATAACATGTGTTTGACCAATGGTGTGAATCAGG 952691 33 100.0 34 ................................. CACCCGCCTGCGGCCATGATGTCCCTATCCGGCA 952624 33 100.0 36 ................................. AGCCTGCTTGTTGCGCGTAGCGGGAAGGTGGAGATG 952555 33 100.0 36 ................................. AGCCTGCTTGTTGCGCGTAGCGGGAAGGTGGAGATG 952486 33 100.0 36 ................................. AGCCTGCTTGTTGCGCGTAGCGGGAAGGTGGAGATG 952417 33 100.0 32 ................................. GGCACGTGACGAACTCATGCGAAGCCGTGCGA 952352 33 100.0 34 ................................. CGGCACGGCAGCGTGATTGCTGCCGTGCCATCTA 952285 33 100.0 34 ................................. GACTGCGTGCCCGAAGACTTGCCGGAAGACTCGT 952218 33 100.0 33 ................................. CAATCGGATTACCCACTATGCAACCATTTGCAG 952152 33 100.0 36 ................................. AACCTAAATTAGGATCTACTAAGAAGGGTATCGAGA 952083 33 100.0 36 ................................. TTAAACCGATGCGTGATAACAAAGGATCAGATGGAT 952014 33 100.0 35 ................................. TGATTGTCCCGCCATGCCTGACATGCGCGGCGCGT 951946 32 97.0 33 .....................-........... GTCGGTGCGGATGGTGTTTGGCTTGAGGATCGG 951881 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 35 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGTCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAAGGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //