Array 1 21941-22931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIU01000009.1 Serratia marcescens strain 395_SMAR 65_75039_1042353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21941 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 22001 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 22061 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 22121 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 22181 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 22241 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 22301 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 22361 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 22421 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 22481 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 22541 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 22601 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 22661 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 22721 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 22781 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 22841 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 22901 28 96.4 0 ....................A....... | A,A,G [22921,22924,22927] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCCCCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31755-33261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIU01000009.1 Serratia marcescens strain 395_SMAR 65_75039_1042353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31755 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 31815 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 31875 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 31935 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 31995 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 32055 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 32115 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 32175 28 100.0 12 ............................ CACATCGCCCGC Deletion [32215] 32215 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 32275 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 32335 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 32395 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 32455 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 32515 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 32575 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 32635 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 32695 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 32755 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 32815 28 100.0 32 ............................ GTTATATGAGAGGTTTCCGCCGATTGTTACGC 32875 28 100.0 32 ............................ CACGAATCAGGAAAATGCACGATTGCACCGGC 32935 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 32995 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 33055 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 33115 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 33175 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 33235 27 85.7 0 .............C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GATGCGCTGACGGCGCTGGGGGAATTCGACTGGCTCAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //