Array 1 6672-524 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNN01000716.1 Xanthomonas oryzae pv. oryzae strain OS185 scaffold715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 6671 31 100.0 34 ............................... TGCACCCGTACCGAAAGTTTGCAGGGGTGCGGTG 6606 31 100.0 35 ............................... CTGCGGCCCGGGTACGACTCAGTTGCAATGCATAT 6540 31 100.0 37 ............................... GCGCCCGTGGTCAAGCTTACGGAGACCATCATCTCCG 6472 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 6407 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 6341 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 6275 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 6209 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 6142 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 6076 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 6010 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 5945 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 5879 31 96.8 35 ...................T........... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 5813 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 5748 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 5683 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 5619 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 5554 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 5489 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 5425 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 5359 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 5294 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 5227 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 5162 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 5094 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 5028 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 4964 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 4899 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 4832 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 4766 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4700 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 4632 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 4566 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 4501 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 4436 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 4370 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 4304 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 4239 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 4173 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 4107 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 4042 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 3976 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 3910 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 3843 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 3777 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 3712 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 3646 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 3579 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 3512 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 3448 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 3383 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 3317 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 3252 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 3185 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 3119 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 3052 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 2986 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 2922 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 2857 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 2792 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 2725 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 2659 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 2593 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 2526 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 2462 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 2396 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2331 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2265 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 2200 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 2133 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 2068 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 2001 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1935 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1868 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1802 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1735 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1667 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1602 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1537 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1472 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1407 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1341 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1275 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1210 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 1145 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1079 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 1013 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 949 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 882 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 817 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 751 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 686 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 619 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 554 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 94 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //