Array 1 63553-60952 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFI01000007.1 Streptococcus ruminantium strain DTK390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 63552 36 100.0 30 .................................... TCTCTTCGTCAAAGATTAATAATCGTTCAC 63486 36 100.0 30 .................................... TTAAAAGACTTCAAAATGAATATATAAAGT 63420 36 100.0 30 .................................... TAGCAGCTTTACCAGCATTCCCAATCTCGT 63354 36 100.0 30 .................................... TTTTACTTGTATGGTCACCAGGAATAGTCT 63288 36 100.0 31 .................................... CTTTGATTTGTAACATATCCTGAAAGTTTAT 63221 36 100.0 30 .................................... CCGTCATAATCTTCCGCCTCCGTTGGGTGC 63155 36 100.0 29 .................................... CAAGATCAAACGGCTTGTATAGTTTTCCT 63090 36 100.0 30 .................................... AGAAATTTAGAATTTTTAAGCTATCACGGA 63024 36 100.0 30 .................................... TACGAGTCAGATTGAAATACAAGTCTTCTT 62958 36 100.0 30 .................................... CACCTCTAGTTTTGGAAGAAATGTTGGCTG 62892 36 100.0 30 .................................... AAATGTGCTTAACGGGGTAGTAGAACTATA 62826 36 100.0 30 .................................... TATTTATGTTACCTGTGGCAATGTTTCGAT 62760 36 100.0 30 .................................... AAATGACAATTCAACTAAATAGGAATGCAC 62694 36 100.0 30 .................................... TAGCGAGTTCTTCCGCTCGTCTCCAGACCC 62628 36 100.0 30 .................................... ATCGGTTCTACCATAAAGGTGTGGTTAAGT 62562 36 100.0 30 .................................... ACGAGATACTACAGAACGGTTCTAAAACGC 62496 36 100.0 31 .................................... AAGAGTTCACAATCCCTAGTCGTACTCGTTT 62429 36 100.0 30 .................................... TCATTCCTGAGCTTCCAACATCTTTTGATA 62363 36 100.0 30 .................................... CCGCCTTCTTAGTGTCTTGTTTGATTGTGA 62297 36 100.0 30 .................................... AGGGTGGCGCAGAGCCCGATAAAACTAAGA 62231 36 100.0 30 .................................... TAGCGAGTTCTTTCGTTCATCTCCTGAGCC 62165 36 100.0 30 .................................... AAATGACAATCCAATTAAACAGAAATGCAC 62099 36 100.0 30 .................................... CCTCCGTTAACGAATCTCCAACAGGAGCTG 62033 36 100.0 29 .................................... AATGACAATCCAGCTAAATAGGAACGCGC 61968 36 100.0 30 .................................... CTGTTAACCAGTCGCATTCGTACTTCTTAG 61902 36 100.0 30 .................................... CACTTGAAATTGCTGAAAACTCATCCGAGT 61836 36 100.0 29 .................................... TGTTAACCAGTCGCACTCGTATTTTTTGG 61771 36 100.0 30 .................................... GTACTCGCAAAAAATAGAAATCGTTGGACA 61705 36 100.0 30 .................................... CATACTCCTTGTACTCAATTGTGTTTCGTA 61639 36 100.0 30 .................................... CAGAATCCCACTTATACCATTCATCCCAAT 61573 36 100.0 30 .................................... CCACACGTCCGATTCCTCGAACAGACTCAT 61507 36 100.0 12 .................................... TACACGTCGGTA Deletion [61460] 61459 36 91.7 30 ......A.C.C......................... ATTTCTTTGGTTTTTTCGCCCGAGATGGTA C,G [61442,61453] 61391 36 100.0 29 .................................... ACAATCTTCAAACAATTTTGTTTTTGGTT 61326 36 100.0 30 .................................... TTTTAGCACCTGTAACTTCTGCTTCTGTGA 61260 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 61194 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 61121 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [61111] 61053 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 60987 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 40 36 98.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATTGCTCAACAATTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATCTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTTTATATGAGCGTTATAAAGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATGTAGAGATCTACTGACGTTAAAAATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCCTGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //