Array 1 86261-87511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYF010000005.1 Escherichia coli strain 1539H contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86261 29 100.0 32 ............................. CGGCGCTCCTTGGTGCTACAGGCACTCTCCCC 86322 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86383 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 86444 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 86505 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 86566 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 86627 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 86688 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 86749 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 86810 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 86872 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 86933 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 86994 29 100.0 32 ............................. TGGCAGTGGCTTTGTTTTTTGCTCTGATATAT 87055 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 87116 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 87177 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 87239 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 87300 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 87361 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 87422 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 87483 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113060-114003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYF010000005.1 Escherichia coli strain 1539H contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113060 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 113121 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 113182 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 113243 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 113304 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113365 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 113426 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 113487 29 96.6 32 ...........................T. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 113548 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 113609 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 113670 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCCGGTTTTTATGCA 113731 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 113792 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 113853 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 113914 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 113975 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //