Array 1 2059187-2060712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2059187 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 2059247 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 2059307 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 2059367 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 2059427 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 2059487 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2059547 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2059607 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2059667 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2059727 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2059787 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2059847 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2059907 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2059967 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 2060025 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2060085 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2060145 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2060205 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2060265 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2060325 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 2060385 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2060445 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2060505 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2060565 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2060625 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2060685 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2065168-2065675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2065168 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 2065228 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 2065288 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 2065348 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 2065408 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 2065468 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 2065528 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 2065588 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 2065648 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2107837-2109184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2107837 28 100.0 32 ............................ ACAGCTCACGAAATGCAACACGATGCATGATA 2107897 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 2107957 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 2108017 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 2108077 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 2108137 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 2108197 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 2108257 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 2108317 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 2108377 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 2108437 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 2108497 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 2108557 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 2108617 28 100.0 32 ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 2108677 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 2108737 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 2108797 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 2108857 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 2108917 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 2108977 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 2109037 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 2109097 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 2109157 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2338006-2338454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2338006 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 2338066 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 2338126 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 2338186 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 2338246 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 2338307 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 2338367 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 2338427 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2341387-2341834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2341387 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 2341447 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2341507 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2341567 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2341627 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2341687 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 2341747 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 2341807 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AAGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2456214-2457843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024900.1 Photorhabdus laumondii subsp. laumondii strain DJC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2456214 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 2456274 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 2456334 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 2456394 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 2456454 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 2456514 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 2456574 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 2456634 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 2456694 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 2456754 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 2456814 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 2456874 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 2456934 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 2456994 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 2457054 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 2457114 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 2457174 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 2457234 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 2457294 28 100.0 14 ............................ CATACCAGAACTAG Deletion [2457336] 2457336 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 2457396 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 2457456 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 2457516 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 2457576 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 2457636 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 2457696 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 2457756 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 2457816 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //