Array 1 29500-28924 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KK211324.1 Vibrio cholerae ATCC 14035 T411DRAFT_scaffold00010.10, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
     29499	    28	 100.0	    33	............................	CGCTTCTGTAGAGGTGATGGGTCCAAAGATGTT	
     29438	    27	  96.4	    33	.................-..........	TACATTCGTGATATCAGCGGATGCGCTTGGTCA	
     29378	    28	 100.0	    33	............................	CAAGGAAATTTGCTACCAAAAGACGTGATCGAG	
     29317	    28	 100.0	    33	............................	CCAAGCAGCAATAAAAATGGAGAGCAATCCTAT	
     29256	    28	 100.0	    33	............................	CCAAAGCAATTCAACAGAGGCCATCAATCGCCT	
     29195	    28	 100.0	    33	............................	TATTGCATTGAATTGCCCCACTCTTTGACCACA	
     29134	    28	 100.0	    33	............................	TCAAAATACTTCTCGCACATCCTGCAAGCGCTG	
     29073	    28	 100.0	    33	............................	CCGAATACAACGGGCAAGCCTGCGCTAACGTTC	
     29012	    28	 100.0	    33	............................	CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG	
     28951	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
        10	    28	  99.6	    33	GTCTTCCCCACGCAGGTGGGGGTGTTTC	                                 	       

# Left flank :   CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT
# Right flank :  TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCAGGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.40,-12.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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