Array 1 63-2694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000204.1 Spirulina major CCY15215 CCY15215_204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 63 35 100.0 37 ................................... TTTCCATCACTCTGGAAAGAAATCTTGGCAATCAGGT 135 35 100.0 34 ................................... AATCCGAGCTGCTCGATTTGCATCTTATATGCAG 204 35 100.0 35 ................................... TAACCCAGCGTAGCCAAGTCCCATCAACGAGTTTA 274 35 100.0 36 ................................... AGTTTCCTGGATTTTCGTTCCAGGCCTCAATGGCCG 345 35 100.0 32 ................................... TTTTTCGTACCGGTGACCCCCCTCATTTAAAG 412 35 100.0 38 ................................... CTGAACCTGAATTTGTTCCCGGGTCGGAACGCTTGAAC 485 35 100.0 33 ................................... GTGAAGCCGAGGCTCGAGAGCTCCGGGCGCATT 553 35 100.0 33 ................................... TGTTACGGTTGCGCTAGTTGGCACAATCGTGCT 621 35 100.0 36 ................................... CTTCAATTCTATACTTAACCGGATTTTCCGGCATAC 692 35 100.0 38 ................................... CTGCGGCGTAAACGTTCAGCAAGGAAGGCATCACGATG 765 35 100.0 35 ................................... TTTATTTCTCCATTTTGTTGTTCAATGACCATTTT 835 35 100.0 31 ................................... TTGTAGCTACGTACTTCCCCGTGAGCATCGA 901 35 100.0 32 ................................... CGGAGGGTTTGGGTTTGGGTTTGGGTTTGTCG 968 35 100.0 38 ................................... TCGGCGGCGTAGACGTTCAAAAGGGACGGCATGATCGT 1041 35 100.0 44 ................................... ATTAGACTCACCATCGTAGCGGGTGCCAACGGTACCCCGATCAG 1120 35 100.0 37 ................................... GAGCCGAATGTCGGACATGGTGTCCTCAATCAAGCTA 1192 35 100.0 36 ................................... ATACCGAGAGCAACGAGAGCGAGACCAGTTTTTTGA 1263 35 100.0 36 ................................... GTTGGGTGGGCATTACTCCCCCCGTCACGGTTGCCG 1334 35 100.0 37 ................................... TCGAACCCTGAAGGCATAGGCGTTGTAGAAATAAGAA 1406 35 100.0 32 ................................... TGGTGGTGGCACCGGTGGTGGCAAGGATAACT 1473 35 100.0 37 ................................... TTGACAGAACCAACGGCAACCTGTGCGGAGACCGGAA 1545 35 100.0 37 ................................... TTGGGCAGAAGGGGTTGTACCTTCAGCTTGAACGCTT 1617 35 100.0 37 ................................... GAAAATTACGGAGCTGGAGCTGGGGATTGGGCAGAAA 1689 35 100.0 32 ................................... GAGAATCGGAGTCGCAACTTGTCCTGCAAAGA 1756 35 100.0 37 ................................... CTGAGCTGCAGGAGCAGCAAGACCGAGACCGGCAATA 1828 35 100.0 30 ................................... CTGAGCTCCGGCCGGGGGTGCCCCGGCCGG 1893 35 100.0 37 ................................... CTCGACGGCACCAGCGTGGGTCTGATCCGAAACAACC 1965 35 100.0 33 ................................... CGGTGCCAGCGGATTGAGTATTAGACGAAGCAC 2033 35 100.0 35 ................................... CGGATTCGGCAGAGCCTGTAACAACAGTCCTGTTT 2103 35 100.0 35 ................................... CATAACCTCACTATTTTGGCATTGGTCACCCACCC 2173 35 100.0 35 ................................... CAGTAAAGGTGATCCCATCCACAACAAGACTCGCA 2243 35 100.0 34 ................................... TCATTATATTGAGGACAGGCGTCGAAATCAAGGC 2312 35 100.0 33 ................................... TAGTATTCGTGTTATTCTGCATGCTGCTGAAAA 2380 35 100.0 33 ................................... GGGAGTTGTAAATGAACTTACCATCGATACCAT 2448 35 100.0 33 ................................... CCTAATTGTTCCCACATCGGGGAGTTGTAAATG 2516 35 100.0 40 ................................... CCTTTAATTAAGGTCACCATGTAACTGTTTGGGGCCATAA 2591 35 100.0 34 ................................... AACTGAACCGGATTATAATCCGGTCGGAGGAAGT 2660 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 38 35 100.0 35 CTTTCGGCTTCTTTGGAAGTCAAACGTATGGAAAC # Left flank : CTTGACCCCTATAGGATCGGGGTGCTACAATCTAGTCACGGTGCGGGTTCTAGATCGGCACTC # Right flank : CTTGATTGGGATTCGGTAAGAGCCGAATCTTTTTTCTTTCGACTTCTTTAACTACCTAGTATTTGTTGTCGAAGTTCTTGACATTCATCTGCTAGAGAAATGTCTAACTTTTTAGCTAAAACATAGGCACAATCGCAATAGTTTAGAGCAGATTCATTGTCATTTAATCGCCAATAAAGTACCGATAAATCCGCAAGGGTTTGAGCCTCTTCACTGCGGCTTTCAACCTCTTGGAAAATTTGGAGTGCCAGTTGTAATTTCTCCAACGCCCGAGATAATTGAGACTGCTCTAGCAACGCCACACCCAACGAATGAAGTGCAGCACCTTCTCCTCTGCGATCGCCAATTTGTTGTGAAAGTGCTAAATGTTTTTGAGCATAATGAGCAGAGAGATCGTAATCTTCTAATGTCTCGTAAAGATCGGCTAAATTCCCCATAGCATAGGCTTCCTCACGCAAATCTCCGATTTCACGAGCGATGGTAATTTGTTTTTCGTGAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGGCTTCTTTGGAAGTCAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 7011-2770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000206.1 Spirulina major CCY15215 CCY15215_206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 7010 37 100.0 41 ..................................... ACAAGATTTAGATAGACCAGCTTTAACAGGTACGTTTCAAT 6932 37 100.0 38 ..................................... AATGCGAAAAGGGCGGTTTGATGAATTGTTTTTGTTTC 6857 37 100.0 33 ..................................... TTTTGTAGCGATAATGCAGATAAAATACCCATT 6787 37 100.0 37 ..................................... AAATGCGATCGCGTTTTCTCGATATCCTTGCAAATAG 6713 37 100.0 35 ..................................... GCTCGACCGTGGAGATGCCCAGAATGGATAAGAGT 6641 37 100.0 35 ..................................... GCCTTTGGAGACTCTAGACAGTTTCTTGAATATAG 6569 37 100.0 35 ..................................... GTTTTCCTAATTGGCGATCGCCGCGCCCTGACTAT 6497 37 100.0 34 ..................................... TCATTTTTTACTATCACTATCCCCTTATCTGTTG 6426 37 100.0 32 ..................................... AGCTATAGCAGTAACTAATCTTACCTCGATTT 6357 37 100.0 37 ..................................... TTAACCGACCTATCTCTAAGAGATCGTCTCGCTCCTT 6283 37 100.0 34 ..................................... AGAGATGATACATTATCAGATGGGATAAAAAGGT 6212 37 100.0 36 ..................................... AGGTATGTCGCACTCTCAATCGAGATCGCCAAAATT 6139 37 100.0 33 ..................................... CTACAACTATAGGAGGTAAAAATGTTTTACTAA 6069 37 100.0 34 ..................................... AAACTGCTTACACCCAATCAACTATACCCAGCCA 5998 37 100.0 37 ..................................... AGACTCGCCAGATTCGCTTATCTGGCAAAATTAGAGT 5924 37 100.0 35 ..................................... ATCTATATAAGTGACTTCTTCTGTAGAAAACACTT 5852 37 100.0 39 ..................................... TTCATCCCATTCGTCCTCTCCCAGAGAGGGGATTCCGAT 5776 37 100.0 33 ..................................... TGGTGAGGCAAGGGATCAATCCTTCTATACAAA 5706 37 100.0 35 ..................................... TTTTGTATAAATCACACTGTAACAAGAGTTCTCCT 5634 37 100.0 33 ..................................... CTAGACATATCTTTTAAATGCGAGTTAGAGAAG 5564 37 100.0 33 ..................................... AAGGATGAAATTTTGCGCCCCCGGTTGGGATTG 5494 37 100.0 35 ..................................... ATAGGCTACCCGAAGAATGTGCGGCTGATTGGATG 5422 37 100.0 33 ..................................... GAGAAATACGCCCGCCTCATCCAATAAAACAAC 5352 37 100.0 35 ..................................... GGAAGCGGTGGGAGTTGCACCCAAGCACCTAACTG 5280 37 100.0 34 ..................................... ACTAGCAACTCGGTTGGATACACCAAAATCCGTG 5209 37 100.0 35 ..................................... CCGATGCAGGAACGTAAATTATCTGCCATATAATT 5137 37 100.0 43 ..................................... AAGGGTTTTTAGAAAGTTTTTTTGAGGATTGTCTACAATGCCC 5057 37 100.0 35 ..................................... GCTACTCACGACCAACGCAACAGGGCAGGCAGTAG 4985 37 100.0 33 ..................................... TCGTATTTCTTGATATAGCTGTGGCAAGTATTC 4915 37 100.0 37 ..................................... AGCCCCTATGTTGGCAAGAAAAACAACAGCGAGAACT 4841 37 100.0 36 ..................................... TCCTTCCATCCCAATAGCCCGAACGTTGGAAGATTG 4768 37 100.0 34 ..................................... GGCTGCAAGACCATAACAAGCTCAATGATGTTGG 4697 37 100.0 33 ..................................... TTCATACAGATAGGATTGGGAATCTTTACGAGG 4627 37 100.0 34 ..................................... GGGAAAATCGCGATAAACCGACGCGATCGCCTTA 4556 37 100.0 34 ..................................... TAATGATCCATCTAATCCAATATAATACTCACCA 4485 37 100.0 33 ..................................... TCACCGTAGAGAGTATTTCTCTCTAGACTAAAA 4415 37 100.0 35 ..................................... ACATACATGAATCTCTTCGTGAGGAGAGGTATTAG 4343 37 100.0 36 ..................................... TTAACACATTGGCGATCTCTTTATTCCTTTTTTTTG 4270 37 100.0 33 ..................................... GAATCTGTTAGTTTGGGTCAATCTCTGATGCTT 4200 37 100.0 34 ..................................... AAAAATATTTCTAATGGGGGAATATCAGTTAATG 4129 37 100.0 34 ..................................... GGAAAACCGCCGAGGATCGGCAGAAAGCCAAGCA 4058 37 100.0 36 ..................................... AACTTGGTGATTCTATTGCTTCTTTTACTGGGGGTC 3985 37 100.0 42 ..................................... CAAATTTCCCAACTCTTGCGTTCTCTTTGATGAAATCGGCGG 3906 37 100.0 33 ..................................... TTTATCTCCGTTAGCCGTTCCTTCCGAAACGGT 3836 37 100.0 41 ..................................... ATACGAATATCTCCTTCTGTATATTGGGAAGCGATCGCAAG 3758 37 100.0 42 ..................................... AATGACAAGCGATCGCCACGTTGGAGTTCCTGCGCCACCCGA 3679 37 100.0 34 ..................................... TTTCCGAGCAAGATTCGGCTTTTATTTCTTCCTT 3608 37 100.0 34 ..................................... TTTCCTCTTGACTTACCTAGTGCAACACGGTATA 3537 37 100.0 44 ..................................... TATTACGCCGAGCTAACCTCCAATGAGGAGATCGATCTTCTCGA 3456 37 100.0 37 ..................................... ATGGTTTTTTGATTTTCTCTGAAGGGATCGATAGCAA 3382 37 100.0 36 ..................................... TTCGGAAGCGCCAAGCACGGTATGAGTGGCTTTTTC 3309 37 100.0 34 ..................................... GATTTATTTTCTGACAAGAATTCATCAAAAGACG 3238 37 100.0 34 ..................................... AGGAACGGGAAGTAATCCTAAAATCAAATCAACA 3167 37 100.0 33 ..................................... GAAAGATGCGATCGCTTTTCTAAAAATCCCCCT 3097 37 100.0 35 ..................................... ACGAATTGTTGGAGCGCCTCGTTTTGTGAGAGAGG 3025 37 100.0 40 ..................................... TACCGTTTTCCATTCAATACCGAAAAAGGATAAAACTAGA 2948 37 100.0 33 ..................................... TGGCAAAATTATCAGTATTGGTGCTGCTGCTGC 2878 37 100.0 35 ..................................... AGGTTTTAAAAGTCTCGCTGGATCGCGGATCGCCT 2806 37 97.3 0 .........................G........... | ========== ====== ====== ====== ===================================== ============================================ ================== 59 37 100.0 36 GTTTCAATAACAACTAATCCCTATGAGGGATTGAAAC # Left flank : AGGCCTTGCGGAAGCGATGGCTGAAATGCTATAGTAACTCTCGGTATCCGCAAACGAACCTTGAAAACTAAATACGGTAAGGGTTTCAACTCTGGGC # Right flank : TATGGATGTAGTTATGCGTTATCCGAAGTGGTTTCCTTATCCGAGTTGCTGGGTTAGGGCAATTGTTCTCGATCTATCTTCTATGGCTGTTGTTTTGGCTTCGATGTTGGCTTTTATTGTCACTGCCATGCCTGTAGGAATGACTGGATCGATGCTAGACGCGAGTAAAGAAGATGCTAGTAATCCTTTATTGGTGGCTTATTTTTTGTTAATTGGTTTTGTTCTCCCTGTTGTTACGTTGAGTTTTATCGATCGCTTTGTTTGGAATCGTCCCAAGGCGGGAGAGCTTTTTATCCCTAGGCTAAAAAGCTGGTTGGATGGGATTTTTGCTTATGTTGTTACGTTGGGTGTTGCTTTCCTCGTAGCTGTTATTTTTGCTTTGTTTGTTTGCGATTCTCGGTATAAGTGCCGCAGTCCAGAAACACGAGTTTGGATGTCTGTGGTGTTTACAATTGGGCTTGCTTACGTTTATCAGGGGCGTTTTTTGGTGGTGCAATGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAACAACTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1809-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000214.1 Spirulina major CCY15215 CCY15215_214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1808 37 100.0 35 ..................................... TCTAAACTCTTGTGTTATAGAGTTCCCATTAAAAA 1736 37 100.0 33 ..................................... CTGGATGATGAACCGCACCATGTGCCTGAAGTT 1666 37 100.0 35 ..................................... TGGGGGATGCCATCGCGATATTGCAACGTTGCAAC 1594 37 100.0 35 ..................................... AGGTGCGTGGCAATTCGGTAATAGTTGCGCTATCC 1522 37 100.0 36 ..................................... ACCGTAGCACCGACGGCAATCCTCATTCTCGTTTTT 1449 37 100.0 36 ..................................... TCGAACGGCAGGAATAAAAAAAGCAATCTCTGCCAA 1376 37 100.0 37 ..................................... TCTACGAACTGTATCAGAAGGGAAATCTGAACGCGAT 1302 37 100.0 38 ..................................... CTAATAAAAAAATGCCCTACTTCAAAGAGACAGAGTTT 1227 37 100.0 35 ..................................... TCTTCTGCTAACCCCATCTCGATAATGCGATCGAG 1155 37 100.0 36 ..................................... TAAAACCGATATCTGAATGAATTCCGATATCTAGCT 1082 37 100.0 36 ..................................... CGTGCCTCGATCACGGGTAAATCAATAGAAATTATA 1009 37 100.0 35 ..................................... AGACCTATATAAAGCATTCGTATTGCACTTTGCTT 937 37 100.0 40 ..................................... ATGAGGTTTCTTGCAAGTGTAGCTTAATGGGAAAGCACCC 860 37 100.0 34 ..................................... GTAAATTACAGGGGATCGGGTTGATGAGCGATGG 789 37 100.0 34 ..................................... TGGACTGCCAATCGCTGGCTGGGAGTGCAAATTA 718 37 100.0 35 ..................................... CGGCAAAGTGCGTGGAGAGAGGATTTTGATAAGAA 646 37 100.0 36 ..................................... TTAAGGGGAGAATTTCAGCGCCCTGAACAGCCGCAA 573 37 100.0 36 ..................................... TTCTAAATAGCCAATCTTTATTGGAGGTAAAAACAA 500 37 100.0 32 ..................................... CTCGAAGGGGAGTCGATAATGGGTCAAGGAGA 431 37 100.0 34 ..................................... TCCGCGCGTACCCCATTGCGAACGCTGCATTTGC 360 37 100.0 37 ..................................... TGAGAAAATAAACATATATAAGGAGCTATTAGTTAAT 286 37 100.0 36 ..................................... GAGGACGGTGATCTCATTATCCTCTGGTCGATAGAC 213 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 100.0 36 GTTTCAGTCCCCTTGGCGGGGATTGGTGAGATGAAAG # Left flank : AAAGTCCGCCGCACCGTTTCGTCACTTATATTCTCTACCAATTTCAATTCTATTAAACGCTCTGACAATAACTGCATTGTCCAACACACTCTTCCTTCCGGCGGATTACTACAAGCTGTTGCCACTAAAAAGGCTTCTCCTTTTCCATCTAATTTTCTGGCTCTTCCCGGACGCAAACGTTCTTGTAATGCTTTTTCTATTCCTTCTTCTACACACTTTTGTCTTGTTCGATGTACTGTTGATTCTCCCACTTTTAACATCGTCGCTATTGTCTTGTCTCGATATCCTTCATCTGCCAACATTAAAATTTGGGCTCTTTTCAGTTTTCTCGCACTTATGCTCCCCTTTGAAGTCATTTGATGCAGTTCCTGACGTTCTTCTTCCGATAGATTGACAATGTATTTGACTACCATAATTTCTCCAGACGATTTTTTTCAGTTTCTCATATTTTTACTCGCCTGTCATTATCATTGTGGTGGACTAGTAGTTTGTGGTTATCG # Right flank : GTCCGGGCGATAGAACCCTTACAGGGCAAGCATTCTCAGACCGTTTTGTACGAACCTGAAATTTTGCCTTGAAATCGAACCACGATCGCGGCTGATTTCACCCGAAACTTTACCGAAACAAAGTCTGAAACTATTCAATTGTCAAGGTTCTGGCAACTTTGTACGAACCTCCCGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGGCGGGGATTGGTGAGATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 3053-3382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000214.1 Spirulina major CCY15215 CCY15215_214, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3053 37 100.0 37 ..................................... CTCGCAAATCTTCCAGAGTCGATTGCATTAACAATGT 3127 37 100.0 36 ..................................... AGTTCCAAATATTGTCATTCGGAACAATTGACTTGA 3200 37 100.0 36 ..................................... TTGAGATCAACTCGATCGCGAACGTTTTGGCACAGC 3273 37 100.0 36 ..................................... CCTTCTCTTTTTTATATTCTAGCGTTGGCTCATTTT 3346 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 CTTTCATCTCACCAATCCCCGCCAAGGGGACTGAAAC # Left flank : ACATATTTGCTTTTTTTCAACCTCATGCAGGATGGAGACACATGAAAGTAACAGAGCGAAGAACGGCTCAAGATTTTGCTTATTGTATGAAGGATTTAGTCGATATTTTCTTTCCTTTTGCCCTCCTCATTCGTGTAGTTCTTGACAATCTCAACACCCATACTCCAGCAGCACTATATCAAACATTTCCCCCAGAAGAGGCACGCAGAATTCTCTCGAAATTGGAGTTTCACTACACCCCCAAACATGGAAGTTGGCTAAATATGGTAGAAATTGAATTATCAGTATTATCTCGTCAATGTCTTAATCGGCGTATTCCTGATCTAGAGACAATGAAGCGAGAAACAGCATCTTGGGAGCGAGAACGAAATCAACAAGAAGCTACCGTGAACTGGCGTTTTACCAATCAAGATGCACGGGTCAAATTGGAGCGGTTATACCCACAACTTGACCTGTCATAATTTATGTGGTGGACTACTACGTTAATAACCATTTTTCCA # Right flank : CATCATGTCTCCTGTTTCTTGCAGGATTTTTACACTTTCATCTCAACAAATAGATGAGCTTATTTGTCCTCACCCAAAAAGCCAAGGAAGATGTTCTCTCCATTGGACAGATGGATATTGAGCAGCATTCATAAAAAAAGTCAGACTCTTTATCTCTCAATCTTCACTTTCAAGGAATCGACTCAAACGAGAGATAATCTCAGCAAACTCCTCAATCCTCACACTGATGCCCCATTCTTGATAAACCGCCAACAATTCTTGATAAAACCAAAGGATATCCTCCGAAGGCTGGTGAAAATGCCGCCAAACCGAACTTCCCTGACGTTGTAACTGGAACAAAAGAGATCGCCCGTTGTGGAGTTTATCTGCAAGAGAAACCCGCACCACCGAAGGGCTACCGTTACGGATATTCTGCAAATAGCGAAGTTTGCGATCGCGCCAAGGGGGTTTCGGCATTTGGTTGGACTCCGTACACCCCTCCACAATTGCCGTCACCTCCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCTCACCAATCCCCGCCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 63-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000257.1 Spirulina major CCY15215 CCY15215_257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 63 35 100.0 36 ................................... CATTCACTGCCGCAGCATTCACTGCCGCGATTGCGG 134 35 100.0 33 ................................... GGCTCGAAATCCCCGTTGACCTGATAAATAACG 202 35 100.0 34 ................................... AACCACTCCATCAGTTGCCACTTCAATTGTGGCG 271 35 100.0 32 ................................... ATTGTTAGAAGCGGCAACAGCGGCACCATCTT 338 35 100.0 35 ................................... TATCTCACCCTCCCCTGTCCGGGGTGGGGTTGATT 408 35 100.0 37 ................................... TGTCAGAACCGACTAGTCGACGTAACACGTTTCCGGT 480 35 100.0 40 ................................... TGGTGAGACCTAACCCTAGGAAGACGACTGCAATCATGCT 555 35 100.0 37 ................................... TCTGGATGCGTAACTCAACCGGATTTTCCGGTTGACG 627 35 100.0 34 ................................... GCAGTCAGATCACCTTGATCGCTCAACACGATGC 696 35 100.0 37 ................................... TCTCCTGCAATTCTTGCTCAGTCAATTTATATCGCAG 768 35 100.0 37 ................................... TTTTGCTGCCCGAGAACAAGACCAAGAACAAGAACAA 840 35 100.0 35 ................................... CATCGAACTGGGTGTCTTGGATGAAAGACCCGTCT 910 35 94.3 0 ....A..........A................... | ========== ====== ====== ====== =================================== ======================================== ================== 13 35 99.6 36 CTTTCGGCTTCTTTGGAAGTCAAACGTATGGAAAC # Left flank : CTTGACCCCTATAGGATCGGGGTGCTACAATCTAGTCACGGTGCGGGTTCTAGATCGGCACTC # Right flank : CGATCGCGCACCCAGCAAAGAAACGCGATCGCTTTGAATTCGAGAAAAAATCTGCTGAGGATGTATTCCCATCCTTTCTGTAGGGACATTTCAGGCAGCGTCCCTACAGGATTTTAGGCGATCGCGCTATATATCAAACGGTAAATCAAGACTAATCTCCCGTTTCCAATTGATCTCGATAAAATTTGATCTGCTCCCTATTTTCGCTCAATTATATTACTTGATTTTCCAGCAAGACACTATAGTTTTCTCGCTGACGAATGAGACGCGATCGCGCATCTTCTAATAATACTTCTGCGGGACGAGGACGGTGTAAAAAATGAGAGGACATGGCATAACCGTAAGCACCGACATCTAATATTGCTAAAATATCCCCCACTTCCAAAGCAGGAAGGAGAACATTTTTGCCTAAATAATCGCGAGAATAAGTCGTGTTTCCACAAACATCGGTTTGATGTGTTTCTTGGGTCGAATCGTGCCAAGAGACAATTTCTCGATCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGGCTTCTTTGGAAGTCAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 8923-6894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000339.1 Spirulina major CCY15215 CCY15215_339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================================ ================== 8922 36 75.7 224 ................AT-..C..A.C.GCA...... TATCATTAAAAATCTAGGGAGCGAGCGCAGCTAGGGAGCGAGCGCAGCTAGGGAGCGAGCGCAGCTAGGGAGCGAGACGCTCCCACTACAGTTGGGTTTAGGAGGTAGGGGTGCAATGCTTGCACCCTGAAATTATGACCTATTATTAGGATTTGATATAAGGATTAATTGTTATTGAAACCGGGGTGCAAGCCGTCCGCTCCCTTTTCCGGTCATGGGTCCTG T [8888] 8661 37 97.3 33 A.................................... GTGGCATCAGATATCTCGGTTGGTTTTTTATTC 8591 37 100.0 37 ..................................... AAAGGGGAGCTACACTCTAGGATTCGAGACTTTTCAA 8517 37 100.0 35 ..................................... GCTGTCTTCTTATATTGATGATAAAGCATGGCAAA 8445 37 100.0 32 ..................................... GGGGTGTGTTTTGCAATAAAGCAAACGACTAT 8376 37 100.0 39 ..................................... CTAAACCCCTACCTGTTTCAGGATTGCGTAGAGTCTCTT 8300 37 100.0 37 ..................................... GTAATTGCTGAGTATGGTTGTCGCGGTCATATCTGAA 8226 37 100.0 35 ..................................... TTTAAGTAAAGAGGGCGATCTACTGGTACAGGGGA 8154 37 100.0 35 ..................................... TCCCTCAGATAGTCCTGATAAACTATGCGACGCTC 8082 37 100.0 35 ..................................... AAAAGATAGTATGGGTGAAGGCTCAAGATACTTTC 8010 37 100.0 35 ..................................... ACTGCTTTCCATAAGTTGTTGGATTCGGCAAAAAG 7938 37 100.0 34 ..................................... AATGGCATCAAAAACTTTCAACTGGTTTATATCA 7867 37 100.0 36 ..................................... GTAAGTGTAAGCACGTCTACGCTCTCTCGTATTGGG 7794 37 100.0 32 ..................................... ACGGATGCCTTACTCCCCAAGAGAGCGTTACA 7725 37 100.0 39 ..................................... GTGACTCGCCTCTACCGTGAGGGTAAAGTAGATGGGTTT 7649 37 100.0 33 ..................................... TTACGATCTTATCGACAATGCTTGGGAATCATT 7579 37 100.0 33 ..................................... GGAAAGGGCAGGTGGCGTTGGCTATGTTATGAA 7509 37 100.0 34 ..................................... TGATAAATAATCCGTCCTTGGGAATAGCAAATCT 7438 37 100.0 33 ..................................... TCTCCAAATCGTGGTTTACCGTGTTCTTATAAA 7368 37 100.0 34 ..................................... TAATAAGAACGTAACGCTTATCACGCTTATCGAG 7297 37 100.0 40 ..................................... TCTCCTCTTTTAGGCGATCCAGCACCTCTTGGGGGTTCGA 7220 37 100.0 35 ..................................... AGGAGGTACGTACCCCGTAGCATCCGGTTCTCAGG 7148 37 100.0 33 ..................................... GCACAAAACGGTGCAAGACCCCACGTTGGTACA 7078 37 100.0 35 ..................................... TTTTGTCAGAGATAGGGGAGAGGGGGAAAGTCCCC 7006 37 100.0 39 ..................................... TCAGAATCATCGGTATCATTGAGGAAATACCTGTTTCAA 6930 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================================ ================== 26 37 99.0 43 GTTTCAATCCCTAATAGGGATTAAGTGTAATTGAAAC # Left flank : CAGGAAATCCCGAATTTCGTAATAATATTTTACGATTGGTGAATGGTTTGAGTAGTTTGGTTTCTTCGACCCAAGATTTAACAGATCGCGTGCAAACCGCGCAACAATTGGAGGTCATGCAGGAAGAGATGGCGAGAAAACAAACAGAAATTGTTGCTCCCCAACCGCACGAAAATATTTCCGAATCTCCGGTTTCTCCAGAGGCGATCGCCGAGAAGAGCCAAAACCCAGAAGAGAAAAATCAAAATCGAGGCAATATTCCCCCATCGTCAGAAGTTAACGAACCTATCGATCCCGTGACGATTTTTCAAACTTCTCCTGTTGAAAAAAAATCGGCGATCGAGGGCGATCGTTCTCCCCAAATGACTCGGGATGAATGGGTGCGGAAAATTTTTCAAAGTCGAACGCGATCGGATGCTGAAGAATGAAAAACCGGACATTATTAAATGGTTGTAATTGAAACCTCGATCGATTGGTTAATGCGATCGAAGGACTACGAA # Right flank : CGCCCGGTAGTGAAACCCTTGTGGTATTTAGTTTTCAAGGTTCGTTTGCGGATACCCAAGGTTACTATAGCATTTCAGCCGTCGCTTTGACAAGAGCCAAAGAAAAAATATCCTGAAAACCTAGACCAGATAAAGCGTTCAGCGTTTGCGGATACCCCTCGATCTGCAAAAACAGGGTCAAACCCAGACCAGACCTGAATTTGAACCCTCTTAAAATCGGGAGTTCAAAATGATACCCCCCGGTATCCGCAAAATGATCCTCAACTCCAGTGATAACCCACTCCATTCAGGCGATCGCCTTCGCAATGCAGCAACCTGGTATCCTGCCCGTTAATGCGTAAGTCCTACTTTTCTGAAGCGCGATCGCGTAACTAGCAATTATCGAGAATTGAACGTTAAACGCAGTAATTTAGTCTGTAAGGAAAGTCTTTTTCTTAATTTTATCCAGGACTTACGAGGTGAGCTTACGCAGCTAGAGAGCGAGACGCTCCCACTACTGT # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.72, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAAGTGTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 13090-11968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000362.1 Spirulina major CCY15215 CCY15215_362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13089 37 100.0 33 ..................................... AATGAGTCAATGCCCTCTATCGACTCGGATTCA 13019 37 100.0 37 ..................................... TATAAGAAAGCAAAATATGCACTCCTTCGCGTGTGGT 12945 37 100.0 35 ..................................... AGAATCGTTAATATGCTTTATCGCTTCTTGATAAA 12873 37 100.0 34 ..................................... GCATCACTACCAACTTTTTCTTGCCAACGTTGCT 12802 37 100.0 35 ..................................... CTATTGGCTCGCCTCTATTATCCTTATTCGGATTC 12730 37 100.0 38 ..................................... ATAAGCGGGAATTGTCGGCGCGGTTGCAGGATAAGCGA 12655 37 100.0 36 ..................................... GCATTGTAGAGACTTAATCGATAAGAGTCTGAACCC 12582 37 100.0 35 ..................................... TTATTTTTCTCAATCAGTTTGTAGCACTTTTTGAG 12510 37 100.0 36 ..................................... TTAATGCTATAGAGTAGGCTGCTAGTTGAAAGTAAG 12437 37 100.0 33 ..................................... AAACCTGCAACGCTGTTGACTATCGCACCAATT 12367 37 100.0 34 ..................................... CGAGGGCTAACGGTTGACGCTGCTGGACAATTAG 12296 37 100.0 35 ..................................... CTGAGAATCCTTTAAAGTCATAGTATTTTCTCCCT 12224 37 100.0 34 ..................................... TCCACACACGATCGTCGTGGAACTCGCGAATAGA 12153 37 100.0 40 ..................................... CCCGATTCAAGTTGGGTAAAGGCATCTTCTGGGAGATCGA 12076 37 100.0 35 ..................................... ATCTTTTTCGCGGCGCAAATCAAAAGATCGCCACG 12004 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 35 GTCTCAACGCTCCTCTGTGAGCGAAACGTATGGAAAC # Left flank : GGAGTCTCGATGATATCGAACTGCAACGCTGGATTCTGGGCTTTGCCGGGCATATCAAGGTTATCCAGCCAGAACCGTTGCAGCAAAAGATTGCGGAGATGGGAGAGGGGATTGTAGGGAGTAGGGAGTAGGGAGTAGGGAGTAGGGGGAATCGCTAAAGCCTTGTCTGGCAAGGGCAATCAATACTGCTGTCCGTAGCAGTCAAGCGATGGCGTTCTCCTCGGAATGCCATCGGGTTTTTTCTAGTTCCCGCGAACTATTTAGCGGATACCGGGGGGTCTCATTTTTGCAGAAGCCCAAAAAATCGCTGTAACCTTGATATACTCTGGGTTTCAGGGATTCTCTGAGAAAATCGGTATCCGCATCCAGACAGGGCAAAGGTTTCGAGGATTTTGACGGGTAAAAAAGTTGCTGCGACGGCACAAGATCGGGTTATAATCAGGGGGTAGACGCAAACTGCCTTGCAAGTCCTTGCTAATCAAGGGTTTGAAGTAGGGTCC # Right flank : TTTCTAGGCGATCCCAATCTTTTTCGAGGGATCGCTTTTCCAATTCCCCACAGAAATCGATAAATCCGGTCAGTCGCACGAACTCATCTAAAAACCCACTAGCCGCCCAAAAACTCGTGTTAAAGTAAGAAATAAGAGAACAGCCAAGGCAATGCAGATTATTTGTCGCATTCCTAAGAGGCTGCAAATGCAAAGAATCCGCAACGCCATCAACCGAGCCAAAGCCATCACCGCCTGCACCATTGCCGGACTCAACGCCCATCCCGCCATCACCACCACCTTCAACGCCGTTGCCTGGCTGGTGGTAGAGGTAGCCAACGAAAAACACGATGAGGGCTAAAGAAGGCTAAAGAAAACAGCGCATCCCGATCCTGCAAAGGAATCGGGGTTATTTTTGGGTTATCGTACTTGCTTCGATTTGCTGCCAATCTTCCGGGGTCAACACTTCCAGCACCACCTTGCGAACATCCAATTTTACCGCCATTGGAGTCGGATCGCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACGCTCCTCTGTGAGCGAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3114-4627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000378.1 Spirulina major CCY15215 CCY15215_378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 3114 37 97.3 34 .................T................... CACCTTCATTGTGGATACATTCTCGGATTCGTAC 3185 37 100.0 34 ..................................... TCTTAGTATCACAATCTCATCGTGGTTGCAGCTA 3256 37 100.0 34 ..................................... TTGTTTTCCCAGTCAGTAGGGGCGCTACTTCCTA 3327 37 100.0 37 ..................................... TCAGGAATATTCGATGGCCAAAAGAACTGGGGTGAGG 3401 37 100.0 39 ..................................... GTGACTGCCGTTCGTCGCGATCAACTTTAGAAGAGATGC 3477 37 100.0 33 ..................................... TATCGTTCCCATCTCAAAGATTTGCATCGCTAC 3547 37 100.0 39 ..................................... CATAGTGCAAATATCACCTATTAGGAGATAATATTTTGC 3623 37 100.0 33 ..................................... CTAAGTTTCGCTAGTCTTTCTTTCGATGCGATA 3693 37 100.0 38 ..................................... CTATTGGTGTGCGATGGGGGAATCCTGCCCTAAATAGC 3768 37 100.0 34 ..................................... TCTCAGTCATGTCGAGGGGGCAATCCTTATCATT 3839 37 100.0 34 ..................................... TCGTCAAAAAAGGGGGATTGTATTCCCCGTCCGC 3910 37 100.0 33 ..................................... GAGTTGGGGACGGGGATCGTTTAACCCTTCCCT 3980 37 100.0 38 ..................................... ACCAGCGCGGACTCCCTATTGAGTGCGATCGCGAAATT 4055 37 100.0 36 ..................................... CTTTGCAGCCATTTCTCATTGATAAGCGATATCGAT 4128 37 100.0 35 ..................................... TTTCAGCCTTTGGTGTGGTCAGCACTGGCTACGCT 4200 37 100.0 34 ..................................... ATCCATATCCTCCGTATCCATGTCCTCGTCGTGA 4271 37 100.0 35 ..................................... ATCGCGTCGTCTCCACCGGGATTGAAGATCGGGTT 4343 37 100.0 34 ..................................... TTTCTCGAGACCGAAGCAATTACCCAATCGGAAT 4414 37 100.0 36 ..................................... AGCGTATTTTTCACAAGTGCAAAAGGGCGGTTTTTA 4487 37 100.0 66 ..................................... CAACCCCCTTTCAAACCCAGATGATATTTAGCTTTCAAGGTTCGGTAGCGGATACCGCCTCATTTG 4590 37 78.4 0 AG..........G.T.........G.......A.CG. | A [4623] ========== ====== ====== ====== ===================================== ================================================================== ================== 21 37 98.8 37 CTAGAAATCAGTCTCACCGGATGGTGAGCATTGTGAC # Left flank : AGAGCAAAGTCTACTTAAACCCATTTCTTCCCTAGCAGAGGCTTATCATCGCTGTCAAACCTTGGGAATGCGTTTGAGTCGCCAGCGTAAGTACATCTTAGAGTTATTATGGACTATTGAGGACCATCTTGCAGCACGGGAAATTTACGATCGCCTCAACCAACAAGGCAAGGAAATTGGCTATACTTCCGTTTATCAAAACCTAGAAGCGCTTTCGAGTCAAGGGATTATTGAATGTGTAGAACGTTGCGATGGGAGACTGTATGGAAATAAAAACGAAATACACAGTCATGTTAACTGTTTGGATACCCGACAAATTATCGATGTTCAGGTTCAATTACCTCCTGAAATTATTAAACAAATAGAAGCACAAACAGGTGTTAAAATTAGTGAATATCGCGTTGATTTTTACGGGTATCGAGGCGATCGCCAAGAACAAGATAAATAAATAAAACCCCTTCGTCAAGAAAAACAAATATTAAGAGCAAATAACGTACTAG # Right flank : CCAAAACCCTTATCCCGTAAAGCCCGGATACCGCCAAACCCAGACTATCTCCTCAAACCCTTGCCATCTCTATAATCCAGCGATTTTTTCTGCCTTACAGATTTTGAGACCCCCCGGTATCCGCAAAAAGCTAAAATAATCGCAATAATATGGATGGATAGGGCGATCGCGCAAAACCTTTGTTATTTTAACAATTGTAAATTATATTTGTATTATTAAAACCAAAGCATTTATAGAGTAAAAATGCAACAGCACGAAAAAAATAATGATCGAGTTTGAGGATTATTACCGATCGCTATATGGCTTTACTCCCTATCCCTATCAAATCCGCTTTGCCGAAAAACTTCTGCTGGATATCCCGCCAAACTGCATTGGCGTGCCAACTGGAAGCGGTAAAGAATCCACCGCGATCGCAGGTTTTATCTGGCAGTGGCTTAAAGCACGACGGTGGCGGCGTTTAGCCTACAACTTGCCCGCTCGAGCGCTGACAGAACAGGTAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGAAATCAGTCTCACCGGATGGTGAGCATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 2039-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000387.1 Spirulina major CCY15215 CCY15215_387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2038 37 100.0 35 ..................................... AGGACAACATTGAAAAAATATGGGGGAATGGCGAC 1966 37 100.0 36 ..................................... ACAATAATGATGCCTAACGATTTGTCAAAAAACGAA 1893 37 100.0 35 ..................................... GTTGAGTCCGGACATACCGGGGCAGTCGGGTTAAT 1821 37 100.0 37 ..................................... CGGAGTCAACAACAACGATTGTTGCGTTTTGTATTAA 1747 37 100.0 37 ..................................... GAATGGCAAAATGATAACACTGTCTGGGAACTAGAAA 1673 37 100.0 37 ..................................... TATCGAACAACTCAACAAAACGATCAGGGATTTTCGT 1599 37 100.0 36 ..................................... ATCACTAGATCAATATATAGAATTAGTAAATCTAAA 1526 37 100.0 35 ..................................... GTAAATTATATAGAAAAGATATTCGTCAAGGTAAA 1454 37 100.0 37 ..................................... GTATGCTTGCGTGTGGAAGCGCGATAGTGTGAAACCC 1380 37 100.0 34 ..................................... TGACCATACGAGAGCGGTTTGCTATAGAAATAGC 1309 37 100.0 35 ..................................... ATCGAACTATCAACGCGGCGATCCAATCAATCGCT 1237 37 100.0 35 ..................................... GGAGAGGACAAAGTGACTCGCGATCGCTTTTACTC 1165 37 100.0 37 ..................................... TTCCAGCAAGGCATAATTCTATGTCTGTCAGGGGTTT 1091 37 100.0 37 ..................................... TTGGCGCGGCATCCCCAGTCTGAATAGGAATCGCAAT 1017 37 100.0 37 ..................................... AAGAGGATTTTTTAAATCTTCTTCAAACAGTTAACAA 943 37 100.0 36 ..................................... AATTCAACTGTGGAGTGATTAGCGTAGTTGCATCGA 870 37 100.0 35 ..................................... TCCCATCCCGTCCGCGCACCTACAAAATAAAAACT 798 37 100.0 37 ..................................... TAAAGGCTGCTTTATCTCGAATCTTGATGGCTGAGGC 724 37 100.0 36 ..................................... ATTCAGGCTGCATGGAATAGAGGGACTTGACGCGAT 651 37 100.0 36 ..................................... ACATACCCATCTATATATAGGGACAAAAAACCATGT 578 37 100.0 36 ..................................... CCGCCAGTCTTCATCATCGTCCCGCCAACTTGTTTA 505 37 100.0 37 ..................................... TCTTCATAATGAATATAAACACCAGAATATTGATGTT 431 37 100.0 37 ..................................... TTTCCGGCAAGTAAACTGCGAGGACTGTATCGTAGAT 357 37 100.0 35 ..................................... AGTTGAGCAATGGCATCAGACGATCCAAAACTCAG 285 37 100.0 35 ..................................... GTACGAGTGAAGACGAAACCAAAGTTCCGTAATAA 213 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 26 37 100.0 36 GTTTCAGTCCCCTTGGCGGGGATTGGTGAGATGAAAG # Left flank : TTAGCTGGCTGCAATGTCAAGAATCCGACTTTCCCGCTCCCGAGACATTGCCTCCTGCTAGATTTGATAAATCTATTTTTCGCATTGTCGAAGGGGCAACGCGCAATATTATCCAATCATCAAAAGAAACAGCAACCCGCCAGCGTTTTCGACCCCGACAATCCAAAACCTTACTCGAAATCAAAACATTCTTGAACGAGCCGTCTACCATAGAAGCATTGCAGCCAGAAGAAACAGAAACCAAAGAGAGAATTTTAAGCCTGATTGCGGATTCTTCTGAAATTAGCAGTTACGACAAAGAAATCAAGCGCCTTTGGAAGCAAAATAAACGCGACGGTAACACTCTCATCCAAGAACTTAACGAACTCTTTATCGATAATGAACTTTATCGAGAAATTGACCCCATCGGCACTCAGTCTATCCTCAAAGTCCTAACGGCTGAGAATATCCAATTGGTTTGCTACGAATGGTTCGATTCATTCTGAGGATGACAGGTAGAT # Right flank : GTCCGGGCGATAGAACCCTTACAGGGCAGGCATTCTCAGACCGTTTTGTACGAACCTGAAATTTTGCCTTGAAATCGAAGCACGATCGCGGCTGATTTCACCCGAAACTTTACCGAAACAAAGTCTGAAACTATTCAATTGTCAAGGTTCTGGCAACTTTGTACGAACCTCCCGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGGCGGGGATTGGTGAGATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 13950-10273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000580.1 Spirulina major CCY15215 CCY15215_580, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 13949 37 100.0 38 ..................................... GGTATTAGCCTAGTCCACCACGCAGCGATCACCATTAT 13874 37 100.0 33 ..................................... TCGAAGGTGTGAGAATCGGAAGGTATAGGGGAA 13804 37 100.0 35 ..................................... GCCGTGCCATTAATTTGAAAAGCAAAAGAGTTGTT 13732 37 100.0 41 ..................................... CAGACCCAAAAAAGATTCCCCCGATTTCAGAAAGAGAATAC 13654 37 100.0 35 ..................................... CTTATATCGGCAAGTCGAATGTCATGATCGACCAT 13582 37 100.0 33 ..................................... AAACTGGCGAAACCGCAGAAGAGGCGATGTCAC 13512 37 100.0 34 ..................................... ATACGAAAGATGCGAGATACAAGACAACTGGCTC 13441 37 100.0 35 ..................................... TTTGATAGCGGGGGTAAAATCCCCGCTATTTGCTT 13369 37 100.0 35 ..................................... AATACACTCAAAAAATCCCCTTCCTTTTTAAGGAA 13297 37 100.0 40 ..................................... CTTGATACCGATTCTTTTGTTGTTAGCTATCTACAGCAAA 13220 37 100.0 33 ..................................... AAAGGATTATTAGGATTATTAGGATAAGGGGCA 13150 37 100.0 35 ..................................... TATATAAGCGAAGATGCCTAAGCTATAAGCTAAAA 13078 37 100.0 35 ..................................... CCAAATCGCTCAGTGGTCCGTACTTCGCGGGTGAA 13006 37 100.0 34 ..................................... TCTTGAAAACTCTAGTTGATTATAGCCTATCTTT 12935 37 100.0 37 ..................................... CCTTAGCTGGAACGTACAAGGACATGGATGGGGATAA 12861 37 100.0 33 ..................................... CTGTCCCTAATCCCCAGAATCTTAGGATAGCAA 12791 37 100.0 35 ..................................... GTGATATATGGCTAATATCGGACACACATTTCCAA 12719 37 100.0 33 ..................................... TGATTAGGTAAAGGGGATGTTTTTGCCTCTCGC 12649 37 100.0 33 ..................................... GCAAAAAGGACTTTTTGGCCGTTGTTTTTCGAG 12579 37 100.0 37 ..................................... ACTTTCTTGATAGTCAAGAAAACTTTCCCTAAAATAG 12505 37 100.0 33 ..................................... CGCAACATGAAGCGGGGGATTGCCATTCATGGG 12435 37 100.0 32 ..................................... TTGTCAAGAGGTTTCCAAAAAAAGTTTTAGGA 12366 37 100.0 35 ..................................... TCGTTGGGGGGAATTCGCAGCAACAAACTCCCACC 12294 37 100.0 33 ..................................... GATATTTGGGAGAAGCTCGAGCAATGGTACATC 12224 37 100.0 35 ..................................... CCGGACCCACGACCAGAGAAAGACCGCCCAGGAAC 12152 37 100.0 34 ..................................... AACTGGTTGCCAACTGATTTCAACTGGTTAGCTC 12081 37 100.0 39 ..................................... TTGCATTGCTCAAATCGTGGTTCTTGATTAAAGTTGAGA 12005 37 100.0 38 ..................................... AGGGGGAGTCTAAAATCATTTTCAGGGTTCCTAAGAAT 11930 37 100.0 41 ..................................... GCTATTTGGATTCCTGTTACTCCTATAGAGATTAAATTCAA 11852 37 100.0 42 ..................................... TAAATCGCAGAGCGAAATCCGTTGCGAATACAAGGGAGATAG 11773 37 100.0 33 ..................................... TGGCTATAAGCAAGTCGCGGCTGAATCGAAAAA 11703 37 100.0 36 ..................................... CTGGCATATTCTCATACAGGCGACGAAAATGCCCTT 11630 37 100.0 34 ..................................... TTGTATTGTTAAGTCGAGTATCATGATCGACCAT 11559 37 100.0 34 ..................................... ATGGGAAGAAAGCGTGGGTAGTGCGCTTCGAGTG 11488 37 100.0 35 ..................................... CCGGATCGCCCCACTCAGGTGTTTGGGTTTATAAA 11416 37 100.0 35 ..................................... CCCAGTTAATCGACTTGAAAAAGCATTTTTCTGTA 11344 37 100.0 41 ..................................... CTCGTTTTTCTTCAAGGATATTAAAAACGCGCAGTGATGTA 11266 37 100.0 34 ..................................... ATTATACCCCTTACATTTGCTGGGTAATAACCCG 11195 37 100.0 35 ..................................... ACGTTTCATCGAGCGCAAACTGAGAATATTCTTCC 11123 37 100.0 43 ..................................... ACTTAGAAGATTATCTCTACGAAGCAAAAAATCAAGCCGATCT 11043 37 100.0 35 ..................................... GAGCGGATGGCTCATGTCATTGCGGGGCAAAATTT 10971 37 100.0 37 ..................................... TTATTTTCATGATTCGCTTGGATTTGTTTCTCTGTAG 10897 37 100.0 42 ..................................... ATTTAGTGGTATTGCACTGATGCACAGTACAGGTTACGGGGA 10818 37 100.0 35 ..................................... GGAAAGGTAGCGGGGGGAAGGTCTTGGCTTGGAGG 10746 37 100.0 37 ..................................... ATCCTGTGTCGGTGGGAGTCCCGTTTGAAAAAGCTGT 10672 37 100.0 38 ..................................... ATCAGTATCCCCGATGTGGAGAACATCTGTTTTATAAA 10597 37 100.0 35 ..................................... CAAAACTGATAGCGCTGTATGTGAGAGCATATTAG 10525 37 100.0 37 ..................................... CATTCCTGTGTTACAAGGCTTATAAATTCTGGGGAGA 10451 37 100.0 35 ..................................... TATTCCGAGATATTTGCCACCGCGCGGGGCTGCTG 10379 37 100.0 33 ..................................... GGTAAACTCAACCATACCGGGAACGCCGTCGTT 10309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 51 37 100.0 36 GTTTCAATCCCTCATAGGGATTAATTGTAATTGAAAC # Left flank : CCATTATCGTTTTCGAGATGACCCACCTGCACATTAGTAAAAAGTTCGGTACTTAAAATCGCCTTTGCGTCATTTTGTAAGAGGCTTTCGCTGGTGGCGTTTCCGAGTTGGGTGGCGATCGACCTAAGCACAATTGCTTTTAATTCTGGATCTGCGCCTTTGACTTGAATATTTGTCGCGGTGACGGCAAGATCGGGAAGGGTAATTTGAGGACGGGATGTATTAGCCGAAGCGGTTTCCGAGAAGTCGGGTAGGGCTTCTACGCTGAGATTAGCGGTTTCTGCGATCGCCCGAGGGGTGGCGATCGTGAAGCTGACGAGGGTATAGAGAAGGAGGTGTGAGAAACGCATGATTTGCCCTTTTTCCTGTAGGTTATTCTCTTTGACTATGGGCAAGGGAAAGAGTTTCTCTGGGTGTGGCGATCATTGGGGTGTCACAGGAAAAGTATTTGATTTTGCCTGTTTGTTGCGATCGCGATCGCTTCAGAAAAGTGCGATCGG # Right flank : TGCCCGATAGTGAAACCCTTGTGGTATTTAGTTTTCAAGGTTCGTTTGCGGATACCGAGAGTAACTATAGCATTTCAGGCGTTGCCTTGGCAAGAGCTAAAGAAAAAATATCCCGAAAACCCAGACCAGATAAAGCATTCAGCGTTTGCGGATACCCCTCGATCTGCAAAAACAAGGTCAAACCCAGACCAGACCTGAATTTGACCCCTCCTAAAATTGGGAATTCAAAATGATACCCCCCGGTATCCGCAAAATGAAGCAGTTATCCCACAACCAATAACAATAGAATGACGGTAAGCGCATCTTACCCGCTAATCTGTAAGCAAGACCCAATACCAATGAATCTGGCCGAAAAGATAAAGCAAGCGATCGCCATCATCCTGCAAAAGTAAACTTAACTCTTGTCCTGCCTTGACCAACTCACAAATTATTTCAACATCAAGGCGACTTGTTTGGCAAAATAAGTGAGAATAAGATCCGCCCCCGCCCGTTTCATGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTCATAGGGATTAATTGTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4587-2138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000569.1 Spirulina major CCY15215 CCY15215_569, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4586 37 100.0 36 ..................................... CGAGAATGTGCCTCTGCTTCGAGGTCGGCAACTTCT 4513 37 100.0 36 ..................................... GATGATTTCTTCTGCCAAAATCATTTTTATTGTTTT 4440 37 100.0 34 ..................................... AACTCTTGGCTGGTATGGAGCGAATACATCCCTG 4369 37 100.0 35 ..................................... TCGATGTTGACAAACCCGCGCATCTCAAAAAAATG 4297 37 100.0 34 ..................................... TCCCCAAATCGAGGTAAATGAGAATCTCTATGGA 4226 37 100.0 36 ..................................... CACTGTATAGACCACCTGATCGCCAACCTTTGAGAG 4153 37 100.0 34 ..................................... GTACATTTCATCGAGCCAATACTGTCGGAAGGTA 4082 37 100.0 38 ..................................... GTAGCGACAGCACTCAGGCAAAATCCAACCCATTAGCG 4007 37 100.0 42 ..................................... GTTGTGTATAGTGCGATCGCGGTGGGAGTGCGATCGCATTGG 3928 37 100.0 36 ..................................... GCGACGAATAAGGTACAACCATTCGTCGCCTGCAGG 3855 37 100.0 36 ..................................... GGTTGCTCTCTGGGGCGGCGGTGGGTCTGGCTTCTT 3782 37 100.0 35 ..................................... CTCCCCTCTCCACACACCACAGGAGAATAACAATG 3710 37 100.0 33 ..................................... AACGCTTTAACCGTATTTGAACGAGCAATCATA 3640 37 100.0 34 ..................................... TCCCAATGCCGCGACCAGTTCTTGCAGATTTTTT 3569 37 100.0 39 ..................................... GTTCTAAACCCACACTACATAAGGCTTTGAGTGGTGTTT 3493 37 100.0 33 ..................................... TCCCGTAGGTTGGGAAGATAGCTATTCAGAGCA 3423 37 100.0 38 ..................................... GACGAGGATTGTTTTTTTCCTGATGGCTTGTCTTTTAA 3348 37 100.0 35 ..................................... AGTATTATTGATGGGTTGTATCAGGCTTTCTCTTT 3276 37 100.0 36 ..................................... GTGGGATGGGCTTGCGAGGGGATGGAAGTCAATTCG 3203 37 100.0 35 ..................................... GCGATCTGCCTCGCTCTTACTATATAATCAATAGA 3131 37 100.0 34 ..................................... GTGCCTGTACAACCTCAAAGCGGGATTGACTCTT 3060 37 100.0 38 ..................................... GTGGCCAAAGGCAAACCCTCAAAACTCAGCAAGCTAAA 2985 37 100.0 36 ..................................... GCTCGTTGAACTTCTGCTGAAGAAGGCGATTTGCCT 2912 37 100.0 43 ..................................... CGGCATTTGAGGACGCTACAGAAGGAACGGGAGCGGTCTGAGG 2832 37 100.0 35 ..................................... ATCGACTGTGGTATATGGTGCGATGATGTCTGCGA 2760 37 100.0 33 ..................................... TCATGGGTTTCTCCTTGGGTTTGGTGAGTAAGG 2690 37 100.0 40 ..................................... TTTTACCAATGCTTCAAAAGAACTTAGATAACTTTTTAGT 2613 37 100.0 42 ..................................... ACGGCCACATTGGTTGTGTGGAGACAACTGAGGTTGTGTCAC 2534 37 100.0 37 ..................................... GCCTATTGCTTCTGGCAAACTTGGATCGGGTTTAACA 2460 37 100.0 35 ..................................... ATACCCTGCACGCTTCAAGAAGAAATTGCCGGGGG 2388 37 100.0 34 ..................................... AAGCGATCTGGCGATCTCTTTTCGATCTTTCTTT 2317 37 100.0 36 ..................................... GCCGAACTGGAGCGGGCAAACCTTGACTTCGAGGTT 2244 36 97.3 34 ............-........................ GTATCAGCGAGCAATGGGAAAATATTCCATTTAG 2174 37 94.6 0 ............................A......G. | ========== ====== ====== ====== ===================================== =========================================== ================== 34 37 99.8 36 GTTTCAATTGCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTTGCGTTTAGTGAGGAATTGGGGTTTTTGCGAACTCTTTTGCAAGTGAGTAATGTTTCTTGTGAGGCTTTGATTGCTGCTTCTTTGCGGGAGATTTATCGATTCAGGAAAGGCGATCGGCCTTGGTTGGTCAAGGCAGGACGAGAGTTAAGTTTACTGTTGAAGGATGATTACGATCGCCTGCGTTATATTTTGAGTCAGATTCATGGGTGATTTTTTGTTGGTTATGGGATAGTGTCGTCATTTTGCGGATACCGGGGGGTCTCATTTTGGACTCCCGATTTTAACAGGGGTCAAACTCAGTTGTAGTCTGGGTTTGACCCTGTTTTTGCGGTTCGGGGGGTATCCGCAAACGCCGAACGCTTTATTTGGTCTGGGTTTTCGGGATATTTTTTCTTTGGCTCTTGTCAAGACGATGGCTGAAATGCTATAGTTATCCTTGGTATCCGCAAACGAACCTTGAAAACTAAATACCATAAGGGTTTCACCACTGGGCA # Right flank : ACCATGACCACCATTAAAGAACAACTCCTCTCCGCGATCGCAACTGCACCAGATTCACTATTAGCAGAACTATTAGAATACATCCAAACTCGAACAACTACATCAACCCAGCAAAGAACATTTATTCCTAATCCACTGCGAGAAATGCAACCCTATTCCTATTTAGCCGATCCCAACGAACCTACAATGGTAACTGTAGATGATAAAATACTCGCTTATCCTCATGTCAAGAAAATCCTGCCCTAGCCATCACGTCTCTGGTAAAAATATCAATCTTGAATGTATTCTTCTCCGTTAATTAAAGCTATTTCTGCACGCAGGAATTCTCGTCCTAAATACAAAGCATGATCCAAATAAGATAAAGGACAAGGTTTCGTTTCTTCAGTTATTTTCATGCCAATTTCCTTTGCAGTTCTTCCCGTAAAAATCGCGGTGGGGGTTCTCTCTACTTTTCCGCGTACTGGGATAGGTTTTCCTGTTTCTGGATCCACAGCTAAACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATTGCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 399-5372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000591.1 Spirulina major CCY15215 CCY15215_591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 399 37 94.6 36 CG................................... ATCAGATGCCAAAAATGCTACGGTAGACACTGATGC 472 37 100.0 40 ..................................... CAAAACACGCAATAAAGACCTGTATAACAATGTCAATCTA 549 37 100.0 32 ..................................... CTTTTCTCTTCATCAAACCTGTTAAGGATTGT 618 37 100.0 34 ..................................... TTATTGTCTGAATCTGAATATGAGTGCCGTAACG 689 37 100.0 34 ..................................... TTCTCATTGGTCACTATTTCTTCTCAATGCTATG 760 37 100.0 36 ..................................... AATTCGAGAGTCTTTTCATAGCATCAAAAAATCCCA 833 37 100.0 36 ..................................... GCCGGCACCGAGGCAAACCAGCCCCCACCGAGAGGA 906 37 100.0 40 ..................................... AAGTCTGACATCGATCAGACAAATGATCACCCATGAATCA 983 37 100.0 34 ..................................... TGTACTTGAGCTTACAAGGGTCGTTAGTTCTCTT 1054 37 100.0 48 ..................................... ATGAACAACAAAATGTATCAAGTCCATGAAAGATACTGTGATCAATAC 1139 37 100.0 42 ..................................... GTGTCGGGCTGTGGCTCTCCCCATCACGGGGATGGTCGCTTG 1218 37 100.0 34 ..................................... ACTCAGATGAAGGATCTTCAAAAACTTTTATGGC 1289 37 100.0 33 ..................................... CGCTAAATTTATCAGCAATCCCAGAAGGATTGA 1359 37 100.0 34 ..................................... TTGAAAGGGGGATCGCAAAATTTAATATTCTTCC 1430 37 100.0 33 ..................................... TGCGATCGCCAGTAACAAAGACCTCAAAAACGA 1500 37 100.0 34 ..................................... AGAGTGTACACCTAGGTTATTTTGTTTGGCCAAT 1571 37 100.0 44 ..................................... TGAAACAACGGCAAGTTAGGAATGGGATCGTTCCTAACTGGTTC 1652 37 100.0 34 ..................................... GAAAAAAGGAAATCCTTGTTAATCGGATTTTAAA 1723 37 100.0 36 ..................................... TGATAAAGATGCAGATTTTATCAAGCTGATTGAATT 1796 37 100.0 36 ..................................... GAGCGATACCGTCGCGAGTTGTACCGGCTAGAGAAT 1869 37 100.0 34 ..................................... CGTTTTTCATTGCCTCGGTTTCTATCTCTTTAGC 1940 37 100.0 37 ..................................... CGCACTCCAACCACACCTTCCAAGCATTCACTGTGGC 2014 37 100.0 42 ..................................... CATCGAAACAGCGATCGCTGGCGATCGCGACCTCAAAAACGA 2093 37 100.0 35 ..................................... GGTTATCCGGCCTCCTTTCTTTTCTATGGAAATTC 2165 37 100.0 35 ..................................... TGTTCTTAGGGCAGATCGATTATGATACTGTCTTT 2237 37 100.0 33 ..................................... GAAGTTTTCGGATTCATCGGGACAAACGTTGCG 2307 37 100.0 36 ..................................... GAAGCGCTAGAAAGAGAAAAAGCATTAGGAAGAGGA 2380 37 100.0 34 ..................................... AGTACAAAAGAAGTGCGATCGCTAATAAGCGTTA 2451 37 100.0 31 ..................................... TTCCCCCAAAAGCGTCAAGCATATCAAAGGC 2519 37 100.0 40 ..................................... TTATCTAATATTTTTGATTTTACGGGGTAATCCCCCTTTA 2596 37 100.0 44 ..................................... CATCTCCCATCCCCGCGTTAACGCCCGAATCGCATCCCATAGGG 2677 37 100.0 34 ..................................... TTATTGTACATCATCACTTCCCATTGCTGTACTT 2748 37 100.0 33 ..................................... TGGCTCGCTCTTGCAATCCTCCATCTTCTTGAT 2818 37 100.0 40 ..................................... CTGATCCTGGCGCTGAAATGTCCTTTTTGTTTTTTGTTCT 2895 37 100.0 37 ..................................... ATTGAGTCTCGCTTTTGCAGTCCTCCATTTTTTTGAG 2969 37 100.0 36 ..................................... TCCGAGATTTCCGCACCGCTTTCCTCTGCTGCTGCT 3042 37 100.0 37 ..................................... AGGCATCCATGATAAGTCTTGTCGCTTTTCTCGTGGA 3116 37 100.0 35 ..................................... GCACGAGTTTATTACGCATCACTTATTCCTCCATT 3188 37 100.0 35 ..................................... ATTAGCGCGGCTTTTTGCCCGTTCTTGGATAACTT 3260 37 100.0 39 ..................................... CGATAGTAGCTTTGATATTGCTAATAAATATCCCGACTT 3336 37 100.0 37 ..................................... CCGATGATTAGCACATTTAACACGGATGCCATTTTAC 3410 37 100.0 39 ..................................... AATATGAGGCAGCATTTCGGGGATGCGATCGCAGGAGAC 3486 37 100.0 32 ..................................... TCGGTGCGATCGCGTTTTCGCTCGATAATCTG 3555 37 100.0 37 ..................................... TCTCGATATCATGCTAGACTCACCGCTCCATGCCTTT 3629 37 100.0 37 ..................................... ACGGGATGTGGAATCCGTAGTGCTTGGATTTTTTAGT 3703 37 100.0 33 ..................................... TGTATTGAACGCGATCGCCAGTCTAAAAACCCT 3773 37 100.0 37 ..................................... CCAACAACACGATGCTTTTTTCTAGGATCATAAAAAC 3847 37 100.0 33 ..................................... CTTTTCAATAGTCTTATCCTTTCGCGGCACCCA 3917 37 100.0 33 ..................................... CCTTGTTTTGTAGTATAATCTTCGCAATACTAC 3987 37 100.0 34 ..................................... GAAGAGATAATGCAATCGGAGAAAGAGCGGAAAG 4058 37 100.0 33 ..................................... TAAAGTGCGAGCGGGTTCGGGCTCTGTTCGCAC 4128 37 100.0 34 ..................................... CCCATTCTTTGGATTCGCGATCGTAGAGATTGAG 4199 37 100.0 35 ..................................... ATCCAAGCGAACATTTACCCATCGATCCTGTTAGA 4271 37 100.0 38 ..................................... CAAAATTTAATATTCTTCCTACAAAGCGATCGCATCTA 4346 37 100.0 35 ..................................... CCAACAATTTGCAGCATTCACCCAAAAAGCACTAA 4418 37 100.0 33 ..................................... CCGAAAATTTGAAAAAGAATTATTGGGGACAAG 4488 37 100.0 36 ..................................... CATATCCACTTTTCGTTTATGGATATTATTTTTCTT 4561 37 100.0 34 ..................................... CTAACGGTTATTCGCGATTATCGGGCGATCGTAA 4632 37 100.0 30 ..................................... GTCGATTTTCACAAAGTCCTTCCGCTTCCA 4699 37 100.0 35 ..................................... GTTAGATTAGAAACCCAAATCGTCGCCCTAGACCA 4771 37 100.0 33 ..................................... CCTGTCAGGTCTAGCGGCGCGATCGTCCCTCTA 4841 37 100.0 33 ..................................... TTTGTTTTTCTATAGTAGCACAGAATTTACGCA 4911 37 100.0 33 ..................................... CCAATTGGATCGAAAGAGCCAGAAGCCCGACGA 4981 37 100.0 33 ..................................... ATCCTTCCTGCTCGCTCTGCCTCATTCTTTGAG 5051 37 100.0 34 ..................................... CTGTAGTAGTTGAGTGCGAGCAAATTATCTCGGA 5122 37 100.0 32 ..................................... AAGAAAAACTGTCTGGCGGTTGCACTTGTCAA 5191 37 100.0 35 ..................................... TTTATCGGATTCAGTTTTGAACGGTTTAAAGCGCC 5263 37 100.0 36 ..................................... TTTTTTATACTTGCGACCGCGTACCGCGTACCTCAA 5336 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 69 37 99.9 36 GTTTCAATCCCTCATAGGGATTAGTTGTTATTGAAAC # Left flank : ATTATTGTAACACAAGACGGGTTAAAACCCGTTGCGTTCGATGTCCATTGATTAAAATCAATGGCTAACCCTCACTCTCTAGCTTTAGGTTTTCTCTACCATAGCCTGAACCCTCGATAGAATTCACAATTGGCAAAAATTTTCTTCAAGGGCTTGCCAAATTGAATGGGGGGTGCTTATAATAAGAAACTGTTGCAGAAAAAGCAGACATTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAAGTTCGAATCTTACCTGGGGAGTTTTAAGGGATTAGTTTTGAGGTTATCAGGTTTAAAGCCGGTATTGTAAAGTTTAACTAAATATAAAGTTTAAAGCCAGTCTCATAATTTCTTCTCTCTCAGATTTCCGAAAGTAC # Right flank : TGCCCAGAGTTGAAACCCTTACCGTATTTAGTTTTCAAGGTTCGTTTGCGGATACCGAGAGTTACTATAGCATTTCAGCCATCGCTTCCGCAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTCATAGGGATTAGTTGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 742-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWA010000096.1 Spirulina major CCY15215 CCY15215_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ==================================== ================== 741 42 100.0 36 .......................................... AGTGGTTTTCTTGGTGGTGGTGGTGGTTTGAGTGCG 663 42 100.0 30 .......................................... GGTGGTTTTGGTGGTGGTTTGAGGGCGAGC 591 42 97.6 36 .A........................................ TCTAGTCCTACTGGTGCTGGTGGTGGTATGTTCGCG 513 42 97.6 33 ....T..................................... GGTAGTGCTGGTGGTGGTTTGAATGCGGGCGGC 438 42 95.2 33 G...T..................................... GCTGGTGGTGGTGGTGGTGGTGGTTTGCATGCG 363 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== ==================================== ================== 6 42 98.4 34 AGCAACATCACATTAACGAACAGTACAGTGAGTGGCAATAGT # Left flank : CGGCTTTAGGAGAAGTTGGGGAAAGTTTAGTTAATCAAATTGCCAATGCGACAGGTGCAGATGTAGCCGCTTCGGTAAATGCAACGGGAAGTGCTAATTATGGCGGGGATTGGGTGTTAGAAAGCAGCACGGGAAGCATTGAAGCCCTCACAACCTTTAGTGACCTGACCCTCAGTGTTTGGGATGGGAAGTTGGCAACCCGGACAGTGACGAGTTCCGCAGATGATAATACGGCGGGAACCCTCCGGTTCGAGATTGGAGCGGCAACGGCTGGGGACACAATTCTGTTTGATTCAGCAAGGACTGTCAACACAACAGGGTTTATTACATGGGGACAAGCCGATCTGACGATTGATGGCAATGGCTCCACGGTTCAGGGTAACAATACGTTCCGGATTTTTGAGAGTACGGCAACAGCAGGAACTACGACGATTCAAAACCTGACGATCTCTGGGGGGAGTGCTGCTTTTGCTAATGGTGGTGGTGGTTTGAGGGCTTTC # Right flank : TGCTGATTATGGTGGTGGTGGTTTGAGTGCGAGCAACATCACCTTAACGAACAGCACGATCGCCTTCAACGTCGCCGATGCCGATAACAATGGCACGGGTGATGGTGGTGGCATTTTCAAGTTTGGCACCGGTATCGCTACCATTAACAATAGCATCATCGCCCAAAACCAAGACCTCGGCGGACAAGCACCGGATTTAAGCGGGACTTTCGATACGATTCAATCCAGTCTCATCCAAAACACGACAGGAGCAACAATTACCACCGATACCAGCAATATAAAAGGGATTGACCCTTTGTTACTCCCCCTTGCTAATAATGGT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAACATCACATTAACGAACAGTACAGTGAGTGGCAATAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //