Array 1 79595-77937 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURP01000138.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002060 CFSAN002060_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 79594 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 79533 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 79472 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 79411 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 79350 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 79289 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 79228 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 79167 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 79106 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 79045 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 78984 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 78923 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 78862 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 78801 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 78740 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 78679 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 78618 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 78557 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 78496 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 78393 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 78332 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 78271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 78210 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 78149 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 78088 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 78027 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77966 29 96.6 0 A............................ | A [77939] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96979-95853 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURP01000138.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002060 CFSAN002060_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96978 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 96917 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 96856 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 96795 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96734 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96673 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96612 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 96551 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 96490 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96429 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96368 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96307 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96246 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96185 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96124 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96063 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 96002 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 95941 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 95880 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //