Array 1 9425-10369 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIS01000025.1 Salmonella enterica subsp. enterica serovar Montevideo strain SE880 MONTEDVIDEO_S5_trimmed_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9425 29 100.0 32 ............................. GTGAATACAGCGACAAATTCGATGTTCGGTTA 9486 29 100.0 32 ............................. AGTTCCGCCGTTGGGTGCTGGATATTTTGGAT 9547 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 9608 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 9669 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 9730 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 9791 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 9852 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 9913 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 9974 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 10035 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 10096 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 10157 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 10218 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 10279 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 10340 29 96.6 0 ............T................ | A [10367] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5265-6512 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIS01000125.1 Salmonella enterica subsp. enterica serovar Montevideo strain SE880 MONTEDVIDEO_S5_trimmed_contig_138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5265 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5326 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5387 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5448 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5509 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5570 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5631 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5692 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5753 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5814 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 5875 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 5936 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 5997 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6058 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6119 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6180 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6241 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6302 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6363 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6424 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6485 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //