Array 1 14289-17395 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIS01000007.1 Lachnospira eligens strain AM32-2AC AM32-2AC.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14289 30 100.0 36 .............................. CAAAATCTGTATTCAAAATAAAAATCTGGTCGTCAA 14355 30 100.0 35 .............................. TTATATTCTAAAGATATATATAATATGGATTTTAG 14420 30 100.0 36 .............................. GATAGGCAAGCTGATTATGGATAACCAGCGATATAG 14486 30 100.0 37 .............................. GACTACTACGAGTGATGAACAGCTTGCAATGGCATTT 14553 30 100.0 36 .............................. GACATATAAATTATTTAAAACGATAGGTTGTAAGCG 14619 30 100.0 35 .............................. GACGGAAACTTGAATGTCTTGCCGTTGCAGTGTCA 14684 30 100.0 36 .............................. GACAGAGAAAAATCCAAGATACGGACGGACATAATT 14750 30 100.0 35 .............................. TATTGTCAAAATGGCGTTGTACATGTGTAAAGATA 14815 30 100.0 36 .............................. TTGTTCTATCTGCTAATGCTATACGCTGTGCATACT 14881 30 100.0 35 .............................. ATCCTGTACTATCTCAACCGGCTTAAGCTCATCCT 14946 30 100.0 36 .............................. ATATCTCCTCTGTAATTAATCAGACAGGAAAAGATA 15012 30 100.0 36 .............................. ATATCTGTATTAGTTGTTGTGTTTGTTGTTGTTGTG 15078 30 100.0 34 .............................. TTATCAGGCATCCTTGATATTTCAAATGAGGTTT 15142 30 100.0 37 .............................. GTTTCTAAGTTCCTTAACATTTGGATCACTGGTATCT 15209 30 100.0 35 .............................. AACATAAAACCTTTAAAAATACAATCTGCCATAAT 15274 30 100.0 35 .............................. TAGACAACCTTAGCAACAGCAGGAAGCCCGTTAGC 15339 30 100.0 35 .............................. TTCAAACGCAATATTATGTATAAAGCATATTGCCT 15404 30 100.0 36 .............................. GCATTTGAACAGGTAGGAAAAGCAATCGCAGAAGCA 15470 30 100.0 34 .............................. AGTGCAATATAATCATTTTCATATTCATCATTAG 15534 30 100.0 35 .............................. GTGTATGCTTCTGCGCCAATGCCTAATTTATTGCC 15599 30 100.0 36 .............................. GAAGAAAAATGTTGCTTTTGATGAAAAGAAATTCTT 15665 30 100.0 36 .............................. ACCATTGTTAGACGGGAGGCTTGCCGGAATCCTTTT 15731 30 100.0 35 .............................. GCTGAAATATGGATAATATTAATCGGCTTAGTTAG 15796 30 100.0 36 .............................. GCGTTATAGAAACGCTTTTATTAATACTGTTAATAT 15862 30 100.0 35 .............................. TACAATAAAATAAAGAAAGTCAAATCTATTAATCA 15927 30 100.0 35 .............................. TAGATTATTGATAGAAGTAATTGCGGTCTGTAAAA 15992 30 100.0 36 .............................. TTTGACAATGATTACGGTATTGATGACGGTGTTGTG 16058 30 100.0 35 .............................. AAGCTTATATAATTTATACCACTTCCGTAATCCTT 16123 30 100.0 36 .............................. AAAGCAGACAAGGAAACACCGAAAGAAAATAAGTTC 16189 30 100.0 36 .............................. AATTTATTAGAATGTGTATAACATCTATAAACATAA 16255 30 100.0 34 .............................. TAGTTTAGCGTGTGGTTATTGTGTTAATTACGCA 16319 30 100.0 35 .............................. AAAGACAAAGCAAGAGGAACTCAAAACAAAGATTG 16384 30 100.0 35 .............................. GTTATTGACAAGCTGTGCATTAACTCCACTGTTTA 16449 30 100.0 34 .............................. GTCCGTCAGAAGTATCTTTGTAGCCGCTTTGTCC 16513 30 100.0 36 .............................. TTTTCTATCAGTCGAGGGCGGGGCGATGGCACTCAT 16579 30 100.0 35 .............................. TAGTAGTAGTCCATAAACCACTCACGCGATACAAT 16644 30 100.0 35 .............................. GATGAATACTATCACAGATGCGTACAGTGATGAAA 16709 30 100.0 37 .............................. CAGGAAGCAATATATCGGGCTATATATAGGGGCATAC 16776 30 100.0 36 .............................. GTTTTAGAACATTCAATCCACTGCACAGCACACTGC 16842 30 100.0 34 .............................. TCTACTAAGCTTGCAGAACGAACATATGCGGAAA 16906 30 100.0 36 .............................. ACATACACAGATGATAGCCTTGTTGATGAAACATCA 16972 30 100.0 36 .............................. TTTGGAAGCAGCACCTTGGTTGTTGTGATTGCAAAG 17038 30 100.0 36 .............................. ATCTATGTTAATATCAATTGCTTCAGTATCAGCTAA 17104 30 100.0 36 .............................. GAGGAAGTACAGCTTATTGCGCCAGAATTATTAATG 17170 30 100.0 36 .............................. AGCTACTCGCTGCATTACTTAAGTTTTAGGAGGTAC 17236 30 100.0 35 .............................. ACTTTCAGCTCCTCGGCGGCTGTATGTCTCACCGC 17301 30 93.3 35 C.....T....................... TTTACCTTCTGGAGAGCCGTACGCGCTCAGTTTCG 17366 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 48 30 99.9 35 GAATTAATAGATACATAGTGGGATGTAAAT # Left flank : AAAGCATTTAATAGGTGAGAAAGAATATGAAGGGTTTAGAATATGGTGGTAGTATATGTATATCGTACTTGTATATGATGTTAGTAAAGATGAAAATGGGCAAAAAAGATGGTCACATATTTTCAAAATCTGCAAAAAATATCTGACGCATATTCAGAATTCTGTCTTTGAAGGAGAAATATCAACAATTCAATTAGAAAAATTACGGGGTGAGTTGAAACCACATGTTAATACTAATCTGGATTCAGTCATTTTATTCAAAAGCAGGAGTGAAAAATGGCTGGATAAAGAATTTTGGGGTAAGGAAGATGATTTGACGAGTTTCATAATTTGATTGTCGACCAAAAATAGTGTAAAATATGCACAGAGTCGACAATGGTGATATTGCTATGCTTCTGGCATATTCAGGGCATAAAGTATTAGTAATCTGTTGGCGGATTTAAAGGGTAGACAGAATAATGCTTCAGAGTTGAGAAACAGAGAGGCTTTAATAATTACGG # Right flank : TTAACTAAGTATTACAAAGATACATTAAACGGGGCAGTATGGAGATAACCAGCGGTGCATTTTCATATGGTAAGGTTATTAAAAAACCATAAATGAAATGACGAATTCTGGGTTAAGGACAATAGATTATGCAAGTGGAAGGACGAGCCGTATAGAGGTAGCAGCAAGACGAGCCATAATGACTGCAGTTACACAAGTCACGACAAAGGTAACAGAGCAGAAAATGGAAAAGCTGCATACGGATTATGTAGAAGTAAGTTGGCATGAGACAGCAAGACCTACGCATCAGGTATGGCAGGGATGAGTGTTTAAATGGAATAGAAATAATGATGCGGATAATAAAATTCAGAATATGGAAAAACAGAGTATATCTGTAGCAAGGAGGAAACAGGCACAAAGCTTAAGAAATGATTCTAAATATCAAGATACAATCAGGCAGAGGAAAGAAGAATGGAAGAAACGACATTCAGAATTTGATAAAGCTACTGCTAAGACAGAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGATACATAGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 20058-24282 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIS01000007.1 Lachnospira eligens strain AM32-2AC AM32-2AC.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20058 30 100.0 36 .............................. TTACTTCTTATAAAAGAAAAGTCATTTGCACTTGTA 20124 30 100.0 35 .............................. CTTATCCTTTGTTAGTTTAGTAATATAGTTATTCG 20189 30 100.0 35 .............................. CCCTCTGCATGGTCTATGAATTCCCTGCATTCTAA 20254 30 100.0 34 .............................. GTAGATGAATACTGCAATACAGCCTATAATAAAG 20318 30 100.0 35 .............................. GTGTGACCGCTTATTTTAGCAGTATAATTAATCAT 20383 30 100.0 36 .............................. CATGTTTATAATATGTTATGCGACGCATTTGCTGGT 20449 30 100.0 37 .............................. GATTCTGTTATTGGGTTCGGTGATGTTCCAGCCGCTG 20516 30 100.0 34 .............................. GCCGACAAGAAAGGATTTAAGCACCCTTTAGGGG 20580 30 100.0 35 .............................. GAAAGAAAACTATTAAACTCTCCTGTTGTAATTAA 20645 30 100.0 36 .............................. TAGATTGTCACCAGCCTGAACTGTGTAAGAATCTGT 20711 30 100.0 35 .............................. CATATCCTTAATCTTACTTGGTTCGTCAGTATCAT 20776 30 100.0 36 .............................. AAATATCAAGAACACATGTTCGATATCCGAGCCGAC 20842 30 100.0 35 .............................. TTAATTTATCTGTTACATATGGGGCTGGGGCGAGA 20907 30 100.0 36 .............................. ACTATAGCCGCAAGTGTACAGGGACTATACGATTTA 20973 30 100.0 35 .............................. GCTGGTATCAGACGTGCAACTTCTTTTGACGACCA 21038 30 100.0 35 .............................. CGCAAAAGGAATTAATTTAGCAGAATAAACACTAA 21103 30 100.0 36 .............................. TAGCATACAATTAATATAAGTGTTATAGGGTTGCTA 21169 30 100.0 38 .............................. CATGTATTATTAGCATATATAATATCACCGCAGTAATA 21237 30 100.0 36 .............................. GTATTAATAATAGCATTGCCAAGTGCTACAAGCTGT 21303 30 100.0 35 .............................. TATTCCCCAAAAAGGTGATAGAACACTACTTCTAA 21368 30 100.0 35 .............................. TAAAAAAATATGGGAATGTATGCAAGCGGTTAAAG 21433 30 100.0 36 .............................. CTTAAAGATGTTGCTCCTAGCGTCAATGAAAAACCG 21499 30 100.0 36 .............................. TATCAAAACACCCCTAATATTTTATTGTTTCTGTTC 21565 30 100.0 36 .............................. ACAGAAGAGCCAGACGAATCAACAGATTCTTACACA 21631 30 100.0 34 .............................. ATTGGAAAGTTGATTATGGACAATCAGCGTTACA 21695 30 100.0 34 .............................. ATAGTAACAAGTAGATACGACCATGTTAATATAT 21759 30 100.0 35 .............................. GCATTAGAGCTATTAGTAAGAGGTTCTTCTGCCAT 21824 30 100.0 35 .............................. CTTCTAACAGTAGAGATATCTTCGTATCTGTCATA 21889 30 100.0 36 .............................. ACAATAATTACCAAGGCATTAGATGTTTTGGAGAAA 21955 30 100.0 35 .............................. ATAATGAAGCTGTAAACCGTCATTTAGTGGTATAC 22020 30 100.0 37 .............................. AATAGAATATGTGGTGTTCTTAAAGCTGACGGCACTA 22087 30 100.0 36 .............................. ACGTATACATTATTTAAGACACTCGGTTGTAAGCGT 22153 30 100.0 36 .............................. GCTTGTAGTCTTGCCGTTCGAGCGGTCTGACACATA 22219 30 100.0 36 .............................. GCTGTTATTGTATCTCGTGAGTGGTTTATGGACTAC 22285 30 100.0 35 .............................. AAAAATTATGGTGGTGTAGAAGATGATTATACAAA 22350 30 100.0 36 .............................. TGACAAACATGTGACCTTGTGGGATTTGGGCGAGAA 22416 30 100.0 38 .............................. TATATATATCACATAACAAAAATTTAAAGAGAGGGCGC 22484 30 100.0 36 .............................. TTTTACAAAACTATGTACATTTGGCAGCTCAAGAAG 22550 30 100.0 37 .............................. GCGTCAGAAGATGAAGAAATGCTGCGCCTGATCATTG 22617 30 100.0 36 .............................. GTGGATGCCCTTATATAAGCACCCACATTCCGCAAA 22683 30 100.0 35 .............................. TCACTTGGATTTCGAGGAAGTAAATTCTCTGGTAT 22748 30 100.0 36 .............................. TACTGTGTATTTCCACGCGGAACAAATCCGGATTTA 22814 30 100.0 35 .............................. ATATTTATTATCACCGTCTTTTAATTCCTTTTCAA 22879 30 100.0 37 .............................. GAAATCTTAATTGGGAGCTTATGAAGTCGCGTTTTAT 22946 30 100.0 36 .............................. AAAGAAGAAGTAACAAATCTCGTATATTGGCGACAA 23012 30 100.0 37 .............................. TTCGATCACAAGGTTATTGAAGACTGGAAGGAACTGG 23079 30 100.0 35 .............................. GAGAAGAAGAAAATGATAAGGCTTTAACGCAATCA 23144 30 100.0 36 .............................. ACAGACACAAGAGCTGAAGGAACAGGGAAAGAATAT 23210 30 100.0 35 .............................. ACAGGAAGTGCAGATGTACACATTAAAACGGCTGA 23275 30 100.0 36 .............................. TTAGTATTAATATAATAACCTATTACGCAATATGAA 23341 30 100.0 35 .............................. TTATAATGTTTAAAATTGCAATTATAATTTATTAT 23406 30 100.0 37 .............................. TTCTTCGACCGAAGAATTATCATTCTGGAAGACAATA 23473 30 100.0 34 .............................. ATTTGAAACAGTTCCGCGAGCTATTCCGAATTCA 23537 30 100.0 37 .............................. AAGGTTGGTTTTGTACAGATTCCTGCGGACGCTGTTG 23604 30 100.0 36 .............................. ATATGAGTTTAGATGATAATTTACATTCCGTAAATA 23670 30 100.0 35 .............................. ATAGATTATACAATCACATATAAATTAAACGGCGG 23735 30 100.0 33 .............................. GCATAGGCTACAGCAAATCCCATCAGTGGTTAG 23798 30 96.7 36 .....................A........ GGATAGAAAAGTTTATTGTGAAGATGTAACTGTACA 23864 30 100.0 35 .............................. TAAGACAGCATATAGGTAATCAGATAGGCGTTTCG 23929 30 100.0 35 .............................. ATTAATGCATTTGATAAACTTGCTAAAGAATCAGA 23994 30 96.7 35 A............................. TTCTGACACGCCACAAGGCTTAATAAGCACATAAC 24059 30 96.7 34 ....................A......... GCATTTGCAGAAAGAGGCTTCTCCCTTGTTATTA 24123 30 100.0 35 .............................. AGTACACCTACAAAGGCAGAAAGGCTGTCAGGATT 24188 30 100.0 35 .............................. TTTATTGTAATGTCTGCTTGTATTGGATTATCAAT 24253 30 90.0 0 .....................A..A....A | ========== ====== ====== ====== ============================== ====================================== ================== 65 30 99.7 36 GAATTAATAGTTACATAGTGGGATGTAAAT # Left flank : GGTATATCAGTAATGCTTTATACAGATGATCAGTTGAATAGAATGAACAAACACATATGAGAAAATAATTAGGAGTAGATAAAGGCTACAAGAGCAAGAAAGTTTTAAATATATGCACAATGGGCTAAGTGCTTGCACCTTACTAAAAAGTTTGTAAATTATAAATAGAATTGAGGTAAGACAACATTATGATTAAGTGTTTTTTGTAGGGAACCATCCGAATGAAAAATATATTAAATTGGGGGAATGTCAATAGATGATGTTTGGCTTAAATTAGTACATTAATTATTTTGGAATTATACTATGTTATGAAAATATTGATTTTATAAATTGATTGTCGACTCATTATAGTGTAAAATATAAGCGGGGTCGACAATGGCTCTATTAATATGTTTAAGTTGAATTTATTCAAAATAGCATTAGAAATTTATGTATGAATTTATTAGGTCGACAAATAACTATTTTGGTTTTGAGATTTAAAGCTGTATAAAAACTTACGG # Right flank : ATGACACATGATAAAAGGTTTGATTATTCTTTCTTAAAGATGAACTATCAAACTGAATATGAGGTTATATTAATTTCTCATTTTCAAAGCTAGTTTATAAATCTATCGAGAATAAGAAATATTAATTCGATAATTAATACTATTTATGCAGCAATCAAGTCTTAAATGTATCTTAGAGCTTTTTTTAACAGAGTTAATATTAATATAATGAATCGTAGATATGTAGTAGATTGTAAATTTAGTTTAGAATATGTAATTAATATAAGCAATCCCCTCCACGCAACCAACGCCACCACAATTTCCACTTTTCTGACAACTACAATTGGTGGAATCGACATTTTACAAGGATTATAATACATACATAACAACAGAAAGGACTGACATTATGCTACAGGAGAATCTTATTATGCTGAGGTCGCTTGCGGGGAAGACTCAGGAGGATATCGCAGAGGTTATTGGAATATCGAGACAGGCATACGCCAAATGGGAGCGTGGTGGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGTTACATAGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //