Array 1 842544-841649 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AEUW02000001.1 Streptococcus macacae NCTC 11558 final_molecule, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    842543	    36	 100.0	    30	....................................	AGAGATTTAACTAATCTAGCTAATCGTGTA	
    842477	    36	 100.0	    30	....................................	GGCTTCTGCTTTTGTAGTTGCTAAACAAAT	
    842411	    36	 100.0	    30	....................................	TGCACTTTAATCTCGTTAAAAGACTCGGTG	
    842345	    36	 100.0	    30	....................................	AAGTCAATTTAAATGCGTGCTGAGCTCGGA	
    842279	    36	 100.0	    30	....................................	AATGCTATCTAACATTTGAGATACCTCTTT	
    842213	    36	 100.0	    30	....................................	TGATGATGGTCAATAATGAAGCGGAAATCT	
    842147	    36	 100.0	    30	....................................	TAGCTACGTTTACTTTCTTCTATCTTCTGA	
    842081	    36	 100.0	    30	....................................	TATGGAACAGGAGCTTACTACAACCTACCC	
    842015	    36	 100.0	    30	....................................	TACGGTTGCTGAAGATATAATAGACGCTAT	
    841949	    36	 100.0	    30	....................................	ATCTTTTTGGGCGAAATCACCGATTACCTC	
    841883	    36	 100.0	    30	....................................	ACTTGGGCCGAAATTGGCGAGGTTGTTGGA	
    841817	    36	 100.0	    30	....................................	AGTGTTGGCAGATAGTACAGTTGCTTGCAT	
    841751	    36	 100.0	    30	....................................	AAAACAAGTTTGGTAGCCGTGGTGCTGGTA	
    841685	    36	  83.3	     0	.............................A.TTGCT	|                             	C [841653]
==========	======	======	======	====================================	==============================	==================
        14	    36	  98.8	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   TGATGAAACAGGTGGTTTTTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAGGGAGAAGATTTAGAAGAAGCCATGAAGAATGCCCGCCAAATGTTGGAGAGCATACTGGCATCTTACTTAGATGAGGGAATGGACTTACCCCAGCCGAGTGATATTAGAAAGATATCAGCTAAAGATGGCTTTGTTACTATGATTCAGGCCGATCCCAGTCCTTATCTTAGAAACAATAAAGCTATTCGGAAAAATGTGACGGTCCCTGAATGGCTGGTGCGATTGGCTGATCGTGACCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAAGAAATTACAATTATAAAGTAAAAAGTGCCAGAAATGTTGATTTCTAGCGCTTTTTTAGGTATAATATAAATGATTAAAATATTTAAAAAGGAATCATTTCGAAGCTGAAATCTGGCTGAGATGAGTGGCGCGATTACGAAATCTTGAGACAAAAATTGGTCCACGAG
# Right flank :  TTCAGAGATTATAGAAATTAAAAACTCAGTACGTATTAGTACTGAGTTTTTAAGTGATAACAGTTCCGATAATGTCAATAGTATCATTTTCCTTTAAGATAATGTCGTTATAATCGGGATTGAGCGAAATAAGTCTTATTTCTTTATTTTTGCGATAAAATTTTTTGACATATGCTTCATTATTTACAATAGCGACGATAATTTGCCCGTGATGAATCGTTTTAGTTTTTTTAACGAAGATGAGATCACCATCGTAAAATAAGGGTTCCATACTATTGCCATTGACCCTAAGAGCAATGTCGTGTTCTGGTATTGGTGCTGGATACTGAATCGTTTCTGCTTTTTCATGCCCTACCCAAACACCTGTTCCAGCAGATACTTCACCGTAAAGTATCACATCTTCATACTTGTGGCCTAAAGCCTGATACAAGTCTTTGACTTTTTTGATATTATTGAGATCAATCCTATTTTGATCTTCTAATTCTTTAGCAATAAATGTC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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