Array 1 109189-110778 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOX02000011.1 Caballeronia calidae isolate LMG 29321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109189 28 100.0 32 ............................ GCGCGCAAGGCGAGCGGTTGTCGCAACTGGAT 109249 28 100.0 32 ............................ TTCCCCATGAACGTGGAGCGCACCGCGAGCCA 109309 28 100.0 32 ............................ ACCTGACCAACAACAGCGGCGGCCCGGCGCTC 109369 28 100.0 32 ............................ ATTCGCGCGCACGTATTCCGCCCACGACACCG 109429 28 100.0 32 ............................ CTCGACGCGCGCCACCCTGTTACACGCCGAGT 109489 28 100.0 32 ............................ TGCATAGCGAGACGAAACTCCGCGAAATTAAG 109549 28 100.0 32 ............................ GGCGCGGGGGGCTGGTGACGCGGATTGGACGC 109609 28 100.0 32 ............................ AGTCGCGCACGGTGCGCTCGGAGCGGCGCAGG 109669 28 100.0 32 ............................ TTCTTTTGCTCGCGATCGAAAACGAGATGCGC 109729 28 100.0 32 ............................ CCGAAGATCGTGGCGGCGGTGAAAGGCGCGGG 109789 28 96.4 32 ............A............... ATACCGCGGCGGTTACGACCCGCTCACCGTCT 109849 28 100.0 32 ............................ ATGCTCGAGACCGTGTTCTGTGAGTTCGCTGT 109909 28 100.0 32 ............................ TTGTCGTCGAAACGGTACGACGTTGCTTGTTC 109969 28 100.0 32 ............................ GCGTCGCACGGGCAGTCACCTTCGCAGCAGTC 110029 28 100.0 32 ............................ GGTCGAGCCGGAAGTAATCGACGAACTGGCGC 110089 28 100.0 32 ............................ AACACGGCGATCATCGGGCAGACGGGCGCGGG 110149 28 100.0 32 ............................ TTCGTATCGACGCCGCCCTGCTTGTCGTAGAG 110209 28 92.9 32 ........T...T............... GCGACGCTTTCGCGTTGTGCTTTCGTCACTTG 110269 28 100.0 33 ............................ GATCCCGGCTCGCGGCAGTCGCCAGCGGAGCGA 110330 28 100.0 32 ............................ CCTCGAAAGTTGATCCACCGCACGTAAAGCGT 110390 28 100.0 32 ............................ TTCGCCGAATTTCTGATGAACGAAAGGCATCA 110450 28 100.0 32 ............................ GTGCGCAAGAACTCGCTAGAGGGTTTCCGCGT 110510 28 100.0 32 ............................ GTCCAGCGGCTTTGACCGAGCGCCCACAGGTA 110570 28 96.4 33 ............C............... CGCGACTGCGCAGCTTCCGATCATGCTCATCCC 110631 28 100.0 32 ............................ AGTGGGACAAGGCGCACGCCGAGTTCTTCGCG 110691 28 100.0 32 ............................ CGATTGCCGTTTGAGTTGGTGCGCCATCCTTC 110751 27 89.3 0 ....A........-.A............ | T [110762] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.1 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TTGGGCGTCGGCTTCCTTCAGGTCCAGCACGACGATGCGCGCGCCTTGCGCGGCGAGCGCTTTGGCGGTTGCCTTGCCGATACCGCGCGCCGAAGCCGCGCCCGTGACGATCACTACTTGGTTCTCGAGCAACATCGTTGTCTCCGTGGATTTGTTTGGGTGTGGACGCAGTTTGTGCGTCTTCGACCTGAGGATCAACGGAGTTTGGTTCAGGTATTGCTGAGAAATTTTCAGGTGTGGGGGTGTCTGGGGTGGGGCGAGCGGTGGAGGCGGGCAGGTTGGGCGGTGGGGTGCTGGGGGGCGGTGTCTGATAGAGTGCTGCGAGCCCGGGCGGGAGTTTCAGTGGCGAGGGATCGGCGGACGTGGCATTACCCTTTTTTCGGGCGCGTTTCTGTGGCTATATGAATCAACGACTTAGACGCGGGGCGGGAATTTTGGGTCGGGTGTGAGAAAAGGGAGTTTTTCTCGATGAATCAAGGGGTTGCGGTTTTTATTGGCTA # Right flank : ACTCACCGTGTCCAACGTGGCCCAACTAACTCGCCCAATTCACTGCCACACGGCACATTCATAAATCACAGAGCAGCTAACAATCTTCGTCGCCATGATTCGCGGCCGCATATCGCATAAGAGATTGAGTTATGTCATGAACCGGTCCCGGTCGCTTTATCTCATATAAATTCGCTGATAGATTTCCCCGTTTGTTTTGGATTACGAAAGTAGCTGAGTGATAAATCAAGATTTCTCACTCAATTTAGACTCCCGCTCGATCTCTCCACCATAAAAACCAAAAAAAACAAATGGACCAAATCCACGCCTCCGATCTGAAAACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTCGAACACTGCCGAGTGCTCGTAAATGGCGGCCGCGTAGAGTACCTAACCGACGCCGGCAAAAAAAGCCTCTACTGGAACATCCCCATCGCGAACACGACGAGCATCTTGCTCGGCTCAGGCACATCCATCACGCAGGCGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 120269-121736 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOX02000011.1 Caballeronia calidae isolate LMG 29321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120269 28 100.0 32 ............................ GATGTCCGAGCGCAAAACGACAGAATCGCGGG 120329 28 100.0 32 ............................ ATCGCGTGCAACTCCTCGTCCGTGTCCGCCAG 120389 28 100.0 32 ............................ CGGAAGCGCTCGCGATGCACGCCGCAAACCAT 120449 28 100.0 32 ............................ GTCGAGAACTGCTTGACGACGCCGGCGGGGAT 120509 28 100.0 32 ............................ ATCATGCAAGCCGCGTTCACGTCGCCGAACTT 120569 28 100.0 32 ............................ GTTAACGGCGACGGGACGATTCTCGTGCCGGC 120629 28 100.0 32 ............................ ATGTCGATGCCGCGCCCGCTATTCTGCTGTTC 120689 28 100.0 32 ............................ TCGGCGGACGTGAGTGGCTCGAGCGCATGATC 120749 28 96.4 32 .............G.............. AGTGGGGGTGGGCCAACTGCGTGGCATCGGCA 120809 28 100.0 32 ............................ GCCGCCGTACGCACATGAATTCTTTAATGGTG 120869 28 100.0 32 ............................ ACGCCGGGAAGCACATGCCCGAGGACTGATTC 120929 28 100.0 32 ............................ GTGCGAGCGGACGTGGTGTAAGTGGCTCTGAA 120989 28 100.0 32 ............................ GCCGACCAACTTCGCCACCGCGTAGAAGGCGA 121049 28 100.0 32 ............................ GATGACGTGGAACAACGAGAGCGGCGAGAACG 121109 28 100.0 32 ............................ GACAGCGCTTCGCCGTCAATCGTTCCGACCGG 121169 28 100.0 32 ............................ GTCGTGTCGCCGAGCTCTTTCGCGTAGCTCCG 121229 28 100.0 32 ............................ TTCAAACCCGCTTTTGCGGCGCGCACCGGGGT 121289 28 100.0 32 ............................ GTTCGGGTCGAGGACTGCAAATCGACTTGCGG 121349 28 100.0 32 ............................ GGACAGACGACGCAGCGCGCGCTCGTCATCGC 121409 28 96.4 32 A........................... TTGCTCCGTGGGCGTTAGCGAGTAGCACCAGC 121469 28 100.0 32 ............................ AGTGCCGCGCTCATTCGATGAAGTGATGCGCA 121529 28 100.0 32 ............................ ACCTCAAACGTCCCGACGCCCGGATTGAAAAC 121589 28 96.4 32 .................A.......... ATCCTGCGGAGTAGGATTAGCATCGCCATCTT 121649 28 96.4 32 .............C.............. GAACGCATGAATCAGGATGTCGCCGGCAGCAT 121709 28 92.9 0 .............C....C......... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.1 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CAAGACCAATGCGGAGCGTTTGCGTCGACGTCGCATGCGGCGCAAGGGGGAGACCTTGGAGGAGGCGTCGGCGGCGATTCCGGACAGCGTCGAACGGCAACCGGATTTGCCTTATGTGCACGTGCGCAGTGCGAGCACGGGGCAGCCGTTTTGCTTGTTTATCGACCAGCGAGGGGAGGCGGGTGAGAGGGTGATGGGTGCGTTTAATAGTTATGGGCTGAGTCGGGGGGCTACGGTGCCTTGGTTTTGAGTTTGCTTTGGACTGGTTTTCGCTTGAAATGTAGTGGAGGGGCGGTGCGGAAGGTCGGGGCTTGAGCGTATAGGGCGTTATCGTCTTTACGGTCAACGGATGCCGTGTCGAAGGTTTTAACCCTTTTTCTGGGACCGTCCGGGGCGGGTCTATGAATCAATGACTTAGGGACGGTCCGGAAACTTGGGTGCGTTGGTGGGAAGGATGTTATTCGCGATAGAAATCAAAGGGATAGGAGAAGAATTGTCTA # Right flank : AAGTCGATACCGCCATGCTCCCGGCAGACCACGGTTCACCGCCGCGACATCCTAGAAATCGCCGGTCGTGAACATGAAATGCATTGCATCTCCCACTACCGCACAGTCACCTGAACCCCTCAACCGCGCCCCCGCCCCCCCAACCCCTTCTCAATCTCCCCATCCATCCACGCAAGAAACTTCGCCACCCGAGGCAACCCCGCATTCTGACTCGGATAAACCAGATGATGCGCCCCGACCTCAACCGCATACTCCCCGCCAAACACCGGCACCAAAGACCCCCGCTCCAGATGCACCGACGCGAGCATCGTGCTCTCCAGCGCGATGCCATGCCCGAGCGCCGCCGCCTCGAGCGACATATAAGACCGATCGAACGAAAAATCGAACGCCTTGCGCTTCACCGCGACGCCGAACTTGCCGAACCACTGCTGCCATTGCACGAGCGGCGATTCGGAGAAGATCAGCCGCCGTTCCAGAAGATCGTCAGGCGATGACACCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55920-57328 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOX02000005.1 Caballeronia calidae isolate LMG 29321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 55920 28 100.0 32 ............................ ATCTGGGTGAACGTGGATGACCAGACGTTCTA 55980 28 100.0 32 ............................ TTGTCTCCCTCGCGTATTTCGTCCATCGCCGC 56040 28 100.0 30 ............................ AGACCGAGAAGCGGTCGGCGTTGATCACGA 56100 28 100.0 33 ............................ GCCGACAATACACCGCCGGGGCGCATTTCGAGC 56161 28 100.0 32 ............................ GCGGTGCGGTTGTGCGCCGCCTTGATCGAGTT 56221 28 100.0 34 ............................ GAGCACGGCATGACGCAGGTGAAAGCGGATACGG 56282 28 100.0 32 ............................ GCGCGTCGGACAAGCAGGTCGGACTTTCAATC 56342 28 100.0 32 ............................ TTCTTCAGATAGCTCGGCTCGGGAGACTGCGC 56402 28 100.0 32 ............................ TTCATCTTGTGAACGCCAGGCACGATGCGCGA 56462 28 96.4 32 ............A............... GAGCACGCCACGAACGGCGCGCTGCGCTTCGG 56522 28 96.4 32 ............A............... AGACGCGCCAGACGCGAGAGCCGGGTAGGCGA 56582 28 96.4 32 ............A............... TTTGAAGCTCCCCGACGCGAACGAATCCAGCC 56642 28 100.0 32 ............................ TATGGGCGGAACATGGTGGGGGAGCCGCAAGG 56702 28 100.0 33 ............................ GATGAGTGCGCTCGTCGGGCTTTCATTCGACGG 56762 28 100.0 30 ............................ CGCGAGATATCGCCGCGATGCTCGCCGCGC 56822 28 100.0 32 ............................ ACGCCGAGGTGCGCGCCTTCCTGATCAAGTAC 56882 28 100.0 32 ............................ AAGAACCATCAGAACCACCAGAGAACCATCAA 56942 28 100.0 31 ............................ ATCCGCGTCGATTGACCGGGCCGTTTTACGA 57002 28 100.0 32 ............................ ATCGGTTTCGCAAAGCATGACAACTTGATCGT 57062 28 100.0 33 ............................ TGTTATGACGTGCGCCACTCGCTGACCCATCGG 57122 28 100.0 32 ............................ GACACGCTGACATGTCGCCGATTGACCGTGAA 57182 28 92.9 31 ............A..............G GAACGCGCCGCGAGCCGATCGTCTGTTGCGA 57242 28 96.4 32 ............A............... ATGATCGTTTCGGGCCGAAGAAGCTCGATAAA 57302 27 89.3 0 ............A........-..A... | ========== ====== ====== ====== ============================ ================================== ================== 24 28 98.7 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : ATAAGCTGTCGACTCATAATCGACCGATAGTGGGTTCGAGTCCCACCCGGCCCACCAAGTCTTTGATTTTAAAGTCAAATACTTAGCGCGATGCCGCCCCTGACAATCGCCTTTCAGGGACAGTCCGGGGACAGTTGTGGGGACCATGTGGGTCACGTTACCCACTAGGGCCGCTCAAGCCACGTCCTTTACCCTCGCGGCTTTGCGGCGTATATGGGTCGTCAGCTACCCCCTTTTTTTTCTGTTCGTCGGCCCCCTAGTGGGTGAAGGCCACGACGGCGCTTTAATTTATGACGCTTGGGCGTCAGAACGCAGCCCGGCGCAAGGCCGAACTTGGTGGCCAACCGACGGAGAGCGGGGCACCGCCTTACCCCTTTTTCTGGCCATTTTGTTGGCGCTTGAAAAATCAATGGCTTAGCGGCGGGGCGGAAATTTGGGTGCTTGGGCGAAAAAGGCGTTATTCTCTCGATGAATCAAGAGGATGGTGACTGATTCGCCTA # Right flank : ACCGGAAACTGGAGTTGCGCTATTCGACGCGGCCTCGTTACCCGTGAGCGCATTCTCGAGTCTTGCCATCTCCAGGTCGTTCTGACTGCCGTCGATCCACTTGGCGTAGGTACGCAGGAACATCTCGACGGTGTGGCCGAGCTGGCGTGCGCAGAAAGCCGGCGTCATGCCGGCCATGAGCATGCTGGTCGCATAGCTGTGGCGCATGTTGTAGGGGCGGCGGTAGCGCAGTCCGAGGCGCTTCAAGATGCGCTTCCAATAGACCCGTTGAAACGCCTCCTCGCTGTGCCAGGGCTTACCGGTACGCGGGTCCTGAAACACGCGCCCGCCCGCCACCTGTGTGAAGGCGCGTTGCCGTTGCAGCGCCGCGAGCGAGCGGCTGTTCAGGCGCACGAGGCGCGCCTCGGCCGTCTTGGTGCGGTTCTTTTCCTCCCCCGCCACCAGCACGCGCTCGATCGCGATGGTGGACTCGGGCGGCGCGTCCGGGCCACTCGGTGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //