Array 1 1102452-1100345 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1102451 30 100.0 38 .............................. TTTAATATATGGTTTGGCATCTATTGTAATATTGTTCG 1102383 30 100.0 40 .............................. CTCTATGCTAGCAGCAGCAAAAAACACAGAACATGAACTA 1102313 30 100.0 38 .............................. CCTCCTCTCTGCAGTAGTATTTACAGGAGTTGGAGTAA 1102245 30 100.0 40 .............................. AAGTTTGTTTCCGTGGATAATCCAATCTGTAGATACCTTG 1102175 30 100.0 39 .............................. CCTCATAATCCTTTTCGTCTTTACAGATGTCATATCCGA 1102106 30 100.0 37 .............................. TAATTATTATATTTGCGTATCGCATAATTATGTGTTA 1102039 30 100.0 36 .............................. TCTTGATATTAGTATACCAAAATCAAAGCCTTGTGT 1101973 30 100.0 37 .............................. TACAATATACGCAGAAAACAGTTAGGTGAGCGCTTAG 1101906 30 100.0 39 .............................. CTACACCGGGGGATCGGTACTTGATGTGACCCATCTTTC 1101837 30 100.0 38 .............................. TCAATTGCTTCAGTTACAGCTTTTTGGGAAGCCAGTTC 1101769 30 100.0 39 .............................. TATGGTCAATCTCTTCTTTATTTTTTGCTTTCATGAGAA 1101700 30 100.0 36 .............................. ATTTGTTGCTGGGTCTTGGCGGTATCTGCTAGAGTT 1101634 30 100.0 39 .............................. CGTAGCGTAACCGTCTCTGTTTCGCTGTTCCATAAAATA 1101565 30 100.0 37 .............................. CTTGGAATGATATCGATTTCAAAAATTCAACTTTATC 1101498 30 100.0 36 .............................. TTTTGTCGAATTCGTCGTCCGTTACGTATACAAACT 1101432 30 100.0 34 .............................. TGCTCAAATTCATGAGGATAACGGCAACACATAC 1101368 30 100.0 35 .............................. AGATATATCCGTTTTCCGGGCCAAATCCCTCGGCC 1101303 30 100.0 39 .............................. CATGAATTGTTTTTGGAAAAAGAGGGAAAATAGCCCTTG 1101234 30 100.0 36 .............................. GCAATCTCTAAAATGGTTCTTGCCTGGCGAATTGTT 1101168 30 100.0 39 .............................. TATCCTATGGGAAACTTAGGTTATTCAAGGCCTCAGATA 1101099 30 100.0 34 .............................. TGAAATAGACGATGAAGGCAAAATAAAGGTTTGG 1101035 30 100.0 36 .............................. TTGGGTATCTTCTGGCTTTGGTTGGAGAGAACACCC 1100969 30 100.0 35 .............................. CAAGGACAGCCGCGAGGAGATGGCCGAATTCGTTG 1100904 30 100.0 37 .............................. AACTGTGCACCAATTGTCCTAACTCTACTTGGCACCA 1100837 30 100.0 34 .............................. CGGGATATTAAGGAGGAATGCCGCCAATGGCTAA 1100773 30 100.0 36 .............................. AAAGATAAATAAACAGGAGTTTGGTTTACTATAGAC 1100707 30 100.0 38 .............................. TCTATAAACACCCAGTCTGTGAAGCCTGTATTGCCCGT 1100639 30 100.0 36 .............................. TTGTTTGTAAATAGTCCAAAGTGTTATAAATTCACT 1100573 30 100.0 38 .............................. CCAGTATGTTCTGCGCCAGAGACGATGAATATCAGCAG 1100505 30 100.0 36 .............................. TGGTCACAGGCAGAGATAAAGACGAACTGGAGAGAA 1100439 30 100.0 35 .............................. ACGTCTTTTTTAGTCTCAAGCAGTTGCTTCAGACC 1100374 30 83.3 0 ......................GAA...TA | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 99.5 37 GTTTCTAGCCTACCTATAAGGATTTGAAAC # Left flank : GGGGACCGGCAGTTTCTGTTTCACAGAGGATATGGCATTCCGTACCACCCCAACACACCTACGCGTTGGTGGAGAGAGTTTTTAGCGAAAAATGGATTCCGCCATCTGAACCTTCACGGCTTACGGCATACCAGTGCAACGTATCTCCTAGAAAAAGGAGCGACGACCAAGTCGGTACAAGAAAGACTTGGACACTCCAGTGAGCGCACCACCGCCGGATACCTCCACGTTACCAAAAAGATGGAGGAGAGAGTTGCCCAAGAATTTGACCGCTTTGACCGCCACAACACTAAACCGTAAATAATTGTATTGGGGACAGATTGGGGACGAAACCTATCTCAAGATAGTAAAATTCATGCAAATTCCCAACAGAGGAAAGATTAAGACCTTTGATTTTTAAAGGGTTAAAATGATTATAACATATACACACAAAGCATGTTACAATTTATAAGGATTTGAAACTTCGACATTATTTTTAATACGCTCAGGAATGTGCGTAT # Right flank : TACCATAATGAAAACTGCTTTACCTTGTAGCAACTTCGCTCAAATTTGAATTGGCAACGGTTTAAAATAGATAAGCCCCGGTACTCATCAGAGTTGCCGAGGTTTATCTACTTTAAGATATATGCAGGATTGTCCTTGTGTATTCATATCTTTTTAGCAATAATGGAGCTTATCGCATGCTGATGCGGGCTATTTCCAGACTTACAATCAACAATTTGCTCCTCACAATAGATAATTTGCCAATCATAATAATATCCCGCCAAGTCGCCTGACCTATAAAAGAACTCATTTTTTTGCCAATCAGGAGCAGTTGGGATAAAGGGTTTTTCTACAAAAACAAGATGAGCATTTAGGCCGCCAATAGAGGTATGCTTTTTATAGCTCTCAAAATGCTGCTGTCGTTTTCCAATCGGTAAAAACTGTAATGCTCCCATAGAGTAAATAACATCATAATAATGATCCATTTCATAATCAATCATATTCGTATGAAGCGCATGAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1143370-1143003 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1143369 30 100.0 39 .............................. TTGAATTTTAAACGTGACCGTCATGCCTGGATATTGCTC 1143300 30 100.0 39 .............................. CTTATTTCAGGAGAAACATCCATGGTTTTAGTGGTTCCA 1143231 30 100.0 38 .............................. GTGGGCACAAGGCGAAGCGAAGGTGATCTGGGAGGGGA 1143163 30 100.0 36 .............................. TAATGCTGCTAATCTTTGATCTAAACGAGCAATTAC 1143097 30 100.0 35 .............................. ATTGGTAACGCTTTGGCTTCCTATGATTTACGGGA 1143032 30 86.7 0 ......................G.AAG... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.8 38 GTTTCTAGCCTACCTATAAGGATTTGAAAC # Left flank : CTGGCTGCGTGAAAAAAAATCCTTCCTGTTCGGTTTCGCCGGGGGCCTAATCCTTTTCCTATATGGCATAATTCCCACCCTGCAGGATTATCCCCACTTTGGCAGGGTGTATGCCGCCTATGGCGGGATATTTATCTTGTTGTCGCTGCTCTGGGGCTGGGGCGTGGACAAGAAAAAACCGGATTTTTACGACTGGGCGGGATCGGCCATTGCTTTAATCGGAGCAGCAATCATTATTTGGACGCCTCGCTAAAAACTGGAAAACCAGTTGCCAAAAAAAGAAAAAGGGAATATTCTTTAAGAAAGATCAATTCACTCTCTTTCATTGGTGTTATCTAAAATTATTTGTCGTCGATCATAGGTAAGGTAAAAAACCCCGGGGATCGACGACAATTTGAAACGCTGTAAAGAGCGCAAACTAAGGTTTTGGTAAATTTTAGGATACCAAAAGTGGCAGGCAGCCTTTTTCACCAGGCCTTTATTTTAGCCCATCGGGACGG # Right flank : ATACCATAATGGAAACTGCTGTATCCCAGTAAAATCAAAAGCCTAGCTCTGTAAAAACTTTGCTCTAATTTGTTTTTGGGGACAAATTGGGGACCGCCGCAAAGTAATAATCCCCGGCAACTCTAATGAGTGCCGGGGCTATTTTTTTCTCTTGGGCATACTACCCCATGGGGTGATCTCATGGACTGCCATGGCTGTCGGCATCTATACCAAGTACAATGGGGCCGCAGATACCGCACTGCCTGTCTAGAGGGAATTCATATCCCCCGCGATTGGGAAAGGCCCATAGACGGGGAACGGCTGGCGCTGCTGCTTGGGTTCGGTATGGGAAGGATATTCGATAGGCCAGTGCAGAGGTGTAGGAAATATGTCCGGAAAGAATAATAGCCCGGGTTATGGCCCGGAGCTATTATTCTTAAACTATTGTAGATGGCAGGGTTGTAGGGATGGTATGTTATATTTCTTATCAATATTGTCTTCTTTAAATTGAGCCTTTCCAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1421835-1423728 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1421835 32 100.0 36 ................................ CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA 1421903 32 100.0 35 ................................ AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA 1421970 32 100.0 35 ................................ ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT 1422037 32 100.0 35 ................................ GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA 1422104 32 100.0 34 ................................ CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT 1422170 32 100.0 37 ................................ ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA 1422239 32 100.0 35 ................................ GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG 1422306 32 100.0 33 ................................ ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC 1422371 32 100.0 34 ................................ ATTTACAACCAAGTACTTAATGCCTATCTGGTTA 1422437 32 100.0 35 ................................ ATAATAGGTATATTTTACCCTAATTAATCTGGAAA 1422504 32 100.0 34 ................................ ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC 1422570 32 100.0 34 ................................ CTGAAGCCATTTGGATATACTGCAAAAGGATACC 1422636 32 100.0 34 ................................ CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG 1422702 32 100.0 33 ................................ CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC 1422767 32 100.0 36 ................................ TCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCC 1422835 32 100.0 33 ................................ ATCAAATTATCACCAATAGAGGTTCTGGCTATA 1422900 32 100.0 34 ................................ TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC 1422966 32 100.0 34 ................................ ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC 1423032 32 100.0 34 ................................ ATCCGGACGCGGATTGCTTCAATTGCCACAATAA 1423098 32 100.0 34 ................................ AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG 1423164 32 100.0 34 ................................ TACAGCCCCATTATGCCACCGCTAATCGGTGCAC 1423230 32 100.0 34 ................................ GTCAGTTTCATTATTATTTGACTCGTTAGTATCT 1423296 32 100.0 34 ................................ ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT 1423362 32 100.0 34 ................................ ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA 1423428 32 100.0 34 ................................ CCATCCATAATGGGTTACACCATAATAAGCGTCA 1423494 32 100.0 33 ................................ TCCAGTGCCTTAAATTTATTGGAAAAAGTTTTA 1423559 32 100.0 36 ................................ TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT 1423627 32 100.0 36 ................................ TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT 1423695 32 84.4 0 .........................C..CTCC | T,C [1423718,1423721] ========== ====== ====== ====== ================================ ===================================== ================== 29 32 99.5 34 GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Left flank : AGATTCAAAGCGTTTCATTGCCCATATCCGCAAAGAGGATAAGAGCGAACAGGAATGTATCAAGGGGACGGTTCTTTTGACTCCCATACATAGAAAGGTGTAAAAGGATGAATTCTTCTCCATTAGGAAATGACTATTTTTTTGCCCAAAGGGATAATTTGGAAGTCGTTTCAAGGGACAAGAGTGAAGGGCAGGTACCTCGTCCCTTGTTCGGTTACTTGATATACCTTTATTGAGGTGATGAATTTACCAAGAGATGCAAGAACTAGAAGTAAAAGCAGAATTATCATATAATGCTTCAAGAAATAAATAGATTTATCTCTCCCATCTGGTGCGAATGTGTAGTAAACATGAAAATGCCGGGGGTTTCGCACCGCGGAATGAGAAGAAAATTGTTGAAATATGGAAGATATCGTAGATATGGATTCGGTTATTATGTAGAGAAGTTTAAAAAGTAAACAAAAATGGATCTGTCAGATGGTTTTTGTTTACTTTTTGCT # Right flank : CCCGAAAACTGGTCCAAAGGAAATGTTAGTCCTGATGTAGTATAACTAAGTCAGGAGGGGACAGTTATGAGAAAACGTTTCACCGAAGAGCAGATCATTGGAATACTTAACTCCCATGAGAATGGGATGCCGGTAGCTGACATTCTTCGGCAACATGGCATTAGCGAACAAACCTTTTATCGCTGGAAATCTAAATACGGCGGAATGGAAGCAAGTGATGCGAAGAAACTTAAGCAGTTGGAAGAGGAAAACCGCAGACTTAAGCTACTCGTAGGTGAACTAACCCTCGACAACCAGGCTCTAAAGTGGGTTATTGAAAAAAACAAGTAAAGCCTGCTCGCAAGCGAAAGCTTGTTAAAGAACTCCAAGATACTTTTGGTATGAGTGAACGCAGAGCGTGCAGGCTTGTTGGTATCGGACGCTCCAGTCATAGATATGTTCCTTCTACTTCAGAAGAGAACGAGGCATTGAAAACGAGAATATCTGAACTTGCCTTTAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 4 1424987-1427147 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1424987 32 100.0 33 ................................ CCATGCCAATTGCATGGCCCTGGACTGTGTTTT 1425052 32 100.0 35 ................................ CCATTGGTCTGCGCCGGAGGATCGCAATTACGTGG 1425119 32 100.0 35 ................................ TGTTATGGAAATGACGGATCCAGATGGAAGGACAC 1425186 32 100.0 35 ................................ ACGACGAGCTGGATCGCAGCGACCTGGCGTGCGTA 1425253 32 100.0 35 ................................ CGTTGCGTGAAGTCTTTCATGGAGATCTCTGAGGA 1425320 32 100.0 33 ................................ AGACATGATATTTCCTCCTTTAAATTTTTTATC 1425385 32 100.0 35 ................................ TTTTTTGATTTGAATATGGGGTATCACCCCAACCC 1425452 32 100.0 34 ................................ TTGGACCTGTTTTTCTAGCTCTACTCTCTTTTGC 1425518 32 100.0 34 ................................ TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC 1425584 32 100.0 34 ................................ CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA 1425650 32 100.0 34 ................................ TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC 1425716 32 100.0 34 ................................ CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA 1425782 32 100.0 34 ................................ TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC 1425848 32 100.0 34 ................................ CTGGTACTAATCCCGGTGAAGGTTCTGGCTCTCT 1425914 32 100.0 33 ................................ TGGAAGGTAAATATTGGGACGCCACCTTAGACG 1425979 32 100.0 34 ................................ CTACCTGGCAGGGCGGCGGCACCGTAAAATGCAC 1426045 32 100.0 34 ................................ TGGTTCAGGTTTGCAAAAAAAGCCTCCAGATGCG 1426111 32 100.0 34 ................................ GCTGCTGCGGGTCATTTTGTGCCTGCATGGCATC 1426177 32 100.0 36 ................................ AAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCT 1426245 32 100.0 34 ................................ TTAGAACGGGGAGGAGATATTGATACCATTTTAG 1426311 32 100.0 34 ................................ CGAAACAAAAATATGCTGCTGCCGGTATGGCTGC 1426377 32 100.0 36 ................................ TTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGT 1426445 32 100.0 34 ................................ TGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCA 1426511 32 100.0 34 ................................ CAGCGTAGCATCCAGTATTCAAGAGAAAGTATCT 1426577 32 100.0 33 ................................ ACCTAACATATATCGTTACATCTATCCTCATGT 1426642 32 100.0 36 ................................ CATTTTTGCGTTTACGTATTTCGAGATCGTACCAGG 1426710 32 100.0 36 ................................ TTATTTGCTTATTTTATCAACCTTTATGATTATATT 1426778 32 100.0 36 ................................ TGCCATGGACGCAGAACGGTATAACCAGAAAGATAC 1426846 32 100.0 37 ................................ CTGCAACAACACCGCTACCGGAATGATACCCTGCCTG 1426915 32 100.0 36 ................................ GTAAATGCTGGAGATGATCCCACTTATCAACCTCAC 1426983 32 100.0 34 ................................ ATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGT 1427049 32 100.0 35 ................................ CTAACATTGTTGGAGTAGATATTGGTTGTGGAATG 1427116 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 35 GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Left flank : CTCGAGAGTGTCTGGCCAGCGAAGTGGATACTTCAATAACAGGACGGCGTGTGACAAGAGTACTAGATAGAATTGCTATTTACAGAGGTTATCCCAAAGAAATCCTCTCTGATAACGGACCTGAATTTGCAGGACTGACCTTGAATCAATGGGCTTATGAACATAGGGTTATCCAACTGTTTATAGACCCCGGTAAACCAATGCAAAATAGCCATGTAGAAAGCTTTAATGGAAAACTCCGAGATGAATGCCTTAATGAACACTGGTTCAGAGGCGTAAGTGAGGCTCGTCGAATTATTGAAGAGTGGCGTCATGAATACAATACAGTTCGTCCACATAGCGGACTGAGCAACAAAACACCAGTAGAATATGCTACAGATCTGGCTAAAAAAACCTGTGAACAAATTTCGTGACTAACATCCCCTGTGGTACAAAACCTGGGGGCAGGTCACGTGGATTGAAATTTCTCGTAACATGCGTAATCTTTGTCCAAATTTTTG # Right flank : TATAATAGATACATACAGGCGGGGGGAAAGGCACGTGGATTCAGAGCGTTTCATTGCCCATATCCGCAAAGCGGATAAGAGCGAACAGTATGTGGATGAACATAATGACCAGGTGGCAGAGCTGGCTTCTGCTATAGCCGAGTCATACGGTTTGGCTAAGATTGCCAAATTGGCGGGACGACATCACGACGACGGCAAAAACACGCCGGAGTTTACCGCATATATCCGGGCGGCAGTTGAGGGAAAGCGGGTTGTCCGCGGTTCAGTCATCCATTCTACCCATGGTGCTATACTGGTCAATGAATTGGCTTCTTTAAAGCGGAATTCCCGGTTAACGGCGGAAATCGTTCGGACGGCGATTATGAGCCATCACGGGCTGAGGGATTGCCTTTCTCTGGATGGTGATGTTGTGTTTGTAGAGGCGGCGGAAAATATTGCTGATTCCTATGAAAGTGTGAAAGAAACGGTATACCAGCGTTACGGCAGAGATTTTATCAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 5 1439455-1435556 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1439454 32 100.0 34 ................................ GTAAATGGCAACATCTGTCATGGGTTATCCTCAA 1439388 32 100.0 34 ................................ CTAGGAACCCGAGGAGTATGGCACGAACTGGACA 1439322 32 100.0 35 ................................ ATTGACCTCTGCCGCTGCAAAACCTTTTTCCCTAA 1439255 32 100.0 34 ................................ ATTGTGTATGAGTAGGACACGGATTGAAATTCCA 1439189 32 100.0 35 ................................ TTTATAATCTTCTAGAACTATTAATGGTACAAAAA 1439122 32 100.0 35 ................................ TCTTGGTATTTCAACTGGCGCATCATCTGGAACGG 1439055 32 100.0 35 ................................ TGCACCACGTTTTTTCTTCCAAGGCATTAACCGGG 1438988 32 100.0 35 ................................ TGCACCACGTTTTTTCTTCCAAGGCATTAACCGGG 1438921 32 100.0 34 ................................ GTACAGCGTCACCAAGGATGAGCATGGGGTTTGA 1438855 32 100.0 35 ................................ TTTATGGAATACGAAATTCCATGCGCTTTCCTCTG 1438788 32 100.0 35 ................................ TAATATAGTTAGATCTTTTCTATCTTTCTTTGAAA 1438721 32 100.0 34 ................................ AAGTTCCCACGTGCTTAAAACCTCGGCCTTCTAG 1438655 32 100.0 35 ................................ GTCTACCAGTTTACGCTTCCGGTTTCTCATTTCCT 1438588 32 100.0 36 ................................ ACGTGATACAAGGATAAGAGATTGTGGTTTGGACCT 1438520 32 100.0 35 ................................ CCCTTCCATTGCGGCGTCCGTTCGGCATCTGCTCT 1438453 32 100.0 35 ................................ TGTCATCACACAGATGGTGGGGGTGGCCATCAGAT 1438386 32 100.0 35 ................................ GAATACCTAACCAGCAAAGCTTTGCGGTTCATCCA 1438319 32 96.9 35 .............T.................. TTTTAATTAATTTTTCTATATCTACTGTTTGAATA 1438252 32 100.0 33 ................................ ACAATTTGGACTGATATAAAAGCGTATATGCAA 1438187 32 100.0 33 ................................ GAATGTTTTCAATCATGGCCAGGAGTTCGTCAG 1438122 32 100.0 33 ................................ CCATAGCACATAAACTCCAAAGCTTTTCAATAC 1438057 32 100.0 36 ................................ GCAGTGTGGGCGAACACAAAGTATCCCACAGTGAAA 1437989 32 100.0 33 ................................ AAAGATGATAATTTAGCGCTTGAACTATACAGT 1437924 32 100.0 35 ................................ GGTGGACGAGCCTTTAGGAGTAATTTCGGTGTATG 1437857 32 100.0 35 ................................ TCGACTCACGCTAAATTTACTTCTGATATGTGCAA 1437790 32 100.0 35 ................................ TTTTACCTACATTCTAATTCCAGAATAAATAGGAG 1437723 32 100.0 35 ................................ TTTCGTTCCAATCACGCTCAGGATATGGTATATAG 1437656 32 100.0 36 ................................ TACTTTGAATTTTAGTCTCAAGTATTAATATATCAA 1437588 32 100.0 36 ................................ GTTACTGGCAAACATGAAATGATAAAAGAGATCAAA 1437520 32 100.0 35 ................................ CAGCCGTCCGGGTGGAGCGTCTGCAGGATATCACG 1437453 32 100.0 34 ................................ GTGGTGTTAAGCCGTATACTCCTGAGCAGATAGG 1437387 32 100.0 34 ................................ TTAATCACATTAACTTTTTGGCCTGAAGATAACG 1437321 32 100.0 34 ................................ GTGGTGTTAAGCCGTATACTCCTGAGCAGATAGG 1437255 32 100.0 35 ................................ CCATGATGTGATGTAATGTGCAAAAAAAGAACATG 1437188 32 100.0 33 ................................ ATAAAAAAGCTAAACAAGCAAATGACAACAATG 1437123 32 100.0 35 ................................ GGTATTTCGCTTTCCCATCATCAAGTAGTTGCCTG 1437056 32 100.0 34 ................................ ACTTTTTAATTTTTCTATAGTAGACTGTTCTTCA 1436990 32 100.0 36 ................................ TCAAGGTCCAGGGGTTGGAGGGCATGGTGGCGAAGC 1436922 32 100.0 34 ................................ TTTTCGGAACGTGTTTGGTGTAGTCGGTATCAGG 1436856 32 100.0 34 ................................ CAACAAGACCCCGAAGTCGACCCGGTTTATGGAT 1436790 32 100.0 34 ................................ CGGCCTGTTTCGCCAATAACGGTCCTTTCTCTCT 1436724 32 100.0 34 ................................ TTGCCCTGTTCATGATCGCTCTTATTTCGACACG 1436658 32 100.0 34 ................................ CTATTCGTTGGTAGAGTGTGACCATATGGATATT 1436592 32 100.0 35 ................................ TGATCAATATAACAATGCTGCCCGTAGTAGTTCAG 1436525 32 100.0 35 ................................ ATAGTACCGCCGATACGTGGAGCGTATCCAGGGGC 1436458 32 100.0 34 ................................ GGTGCAAACTTTAATAGGGTTCTTGACGCCTGGA 1436392 32 100.0 36 ................................ GTAAACCTGGAGAGTTTTGCTAATGGTGCCCTAGCA 1436324 32 100.0 37 ................................ AAATTTTCTCTGAAGTCAATAAAATGTAAAAATATGG 1436255 32 100.0 34 ................................ CAATGACTTTTGCCCAAATTTGGACAATGATAAA 1436189 32 100.0 34 ................................ CGCCACAGAATATTGATGATCCGGAGGTGACATT 1436123 32 100.0 34 ................................ GTGCATTTTACGGTGCCGCCTCCCTGCCAAGTGG 1436057 32 100.0 36 ................................ GGGCTAGAGGCAACAGTAAATTATGTGTCATTCCTA 1435989 32 100.0 35 ................................ AGCCTACCTATAAGGATTTGAAACACGATTGGCCT 1435922 32 100.0 34 ................................ CATTCGTTCGGGATGATGTTTGTGAGGAAAGAGT 1435856 32 100.0 36 ................................ AGGAGATGGATATACCGGCTTCCTGCGCGGATTGAA 1435788 32 100.0 35 ................................ CCATCCCCGGTATCTGGCCCTTTTGGGGGCTGATA 1435721 32 100.0 34 ................................ TTACTGTCGTATAGATTGCGCATGGTTTAATAAG 1435655 32 100.0 36 ................................ GTAAACCTGGAGAGTTTTGCTAATGGTGCCCTAGCA 1435587 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 59 32 99.9 35 GTTTAAATCCACGCTCTCGTACAGAGAGCGAC # Left flank : TCCCTTTGCTTGCCCTCTCTTCCAACGTGGACTTCATCAGGCAAACTTACTTCAGGCGGTAGTTGTGGAACCTGGATCTCTTTACACAGGTCGAAATATCGTCTGTAGGCTTCACTACGGTTTGGGTGCAGAATGTTTAGGATAAAATCAATATCTACCAACAGGCTACCTCCGGCGACATAGTCCTTGTGGCTACTCCACGGGTAATCGGCTCCTTCCGGGAGCTTGGCACGTATGGGATTTTGATGGATATAAACAGCAAGTGCTGTTAGGTAACTGTCATTTGTCACATAAAAATGCCTTATGCCTCTGTTGAAAAAGGACATGCCCTATATGTTTGTATCTCTGATTAAAATATTGTGTATACATTGTTGAATCCCCTGTATCACCTTGATGACATCGTTTTCTTAGTTCATTGTATTGTGAGTTTCAAAACAAATCAATGAGTCAAGCCTGACCCCACAACTCCGGCTGGGGGCGCCGATTCAGATTGTTGACCG # Right flank : AGCAAAAAGTAACAAAAAATCATCTATTTGATTATATTTCTGTTCAATTCTTTAAAATTTTCCTCAATTCATATCACAAATTCGATATTTTCCATCTTATTTCGACGATTATCCTCTCGTTTTGCAGTGCGAACCTCCTAGGAATTTTATGTGCGCTATGGGTTCGCACTAAATGATCAGGGTATCCTCAACATTAAACGAAGTTTTTGCACCAATATGCTCAACTTTGTTCTTGTAATTATTGCCCAGCATATAGAACCTTAGACTATCCGTCTCCCTATCAATAATTTGCTCAAGTTTATGCTGAACCTCCCGAAATTTTGCCGCATCCAGCACGCATTCGAAGACCGAATTCTGAACGCGTTGCCCATAATTCACACATTGCTTGGCAACCTGACGCAGCCGTTTTCTCCCCGCTGCCGTTTGAGTGTTAACATCATACGTGATCAGCACTAAAATTTCATCTCACCTACTTCCACATAAACGCCGGATATCCGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCCACGCTCTCGTACAGAGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 6 1800074-1803707 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1800074 30 100.0 36 .............................. GGGGGGTTAATGCCGATTATGACGAGAGCCAACCGG 1800140 30 100.0 37 .............................. CTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAG 1800207 30 100.0 38 .............................. TATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTA 1800275 30 100.0 37 .............................. CCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCT 1800342 30 100.0 36 .............................. AATTTAATAGCTTCCTTAATATATCAACTTGATTAG 1800408 30 100.0 35 .............................. AATTCTGCGATTTCATGGGCCAGACTGCCCTCTGC 1800473 30 100.0 36 .............................. TAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGA 1800539 30 100.0 36 .............................. CTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGA 1800605 30 100.0 40 .............................. TTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCA 1800675 30 100.0 35 .............................. TATTTTAATTATTAATATAATTAGTTAAATATTTT 1800740 30 100.0 39 .............................. TTCTTTGAGATATGACTGGATAAATCTGTAATCAACAAC 1800809 30 100.0 39 .............................. CTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACT 1800878 30 100.0 35 .............................. TGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGC 1800943 30 100.0 39 .............................. ACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTT 1801012 30 100.0 36 .............................. CGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGC 1801078 30 100.0 36 .............................. CAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATA 1801144 30 100.0 38 .............................. TTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTG 1801212 30 100.0 37 .............................. ATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTA 1801279 30 100.0 35 .............................. GGTCTATGCTTCTCACAATACCCGCCGCCTCGAAC 1801344 30 100.0 35 .............................. ATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAA 1801409 30 100.0 35 .............................. GAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAG 1801474 30 100.0 40 .............................. ATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAA 1801544 30 100.0 39 .............................. TCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTG 1801613 30 100.0 37 .............................. CCGGCACACTCCACACATGGTTAGGATTATCGATCAA 1801680 30 100.0 34 .............................. TACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCA 1801744 30 100.0 36 .............................. CTGCTATTGTATAACGGTTATTAGTGATTGTCAACA 1801810 30 100.0 40 .............................. ATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTT 1801880 30 100.0 34 .............................. ATATCTTCAAACCGTTCATCCATTTGTTTCGCAG 1801944 30 100.0 36 .............................. CTCACCGACGCATTGGCCCACTGATCCGTGGCATCA 1802010 30 100.0 35 .............................. CAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGA 1802075 30 100.0 37 .............................. TATATCGCATTGAGTACGGCGGAAAACTCCTTGGTAT 1802142 30 100.0 38 .............................. TCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAG 1802210 30 100.0 35 .............................. TCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCAC 1802275 30 100.0 35 .............................. TTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCC 1802340 30 100.0 37 .............................. ATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGA 1802407 30 100.0 37 .............................. CAGAGCAACCTTACCAGTATCGATGTTCGACCCCACT 1802474 30 100.0 37 .............................. TTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTC 1802541 30 100.0 37 .............................. TTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCC 1802608 30 100.0 37 .............................. ACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGT 1802675 30 100.0 36 .............................. TTCATACATTTCTTTGTATCACCTCGCTCACTGCAA 1802741 30 100.0 34 .............................. CAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAA 1802805 30 100.0 36 .............................. TACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGG 1802871 30 100.0 39 .............................. TTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTT 1802940 30 100.0 39 .............................. CCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCC 1803009 30 100.0 37 .............................. TTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCC 1803076 30 100.0 40 .............................. GATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCC 1803146 30 100.0 35 .............................. TGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCC 1803211 30 100.0 35 .............................. ATACTACCAATGAACAAGCCGAATCGTTGGCCTAC 1803276 30 100.0 39 .............................. TCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCA 1803345 30 100.0 34 .............................. CTCCCATTGCTCAGCGGAAAATATTAGACGCAGC 1803409 30 100.0 38 .............................. AGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCC 1803477 30 100.0 35 .............................. TGGGAATGGGACGGTGATATAAGTGGCCAATACCA 1803542 30 100.0 39 .............................. TTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAG 1803611 30 100.0 36 .............................. TGATGGTCGCCCATCACGATTTGCATTACCCGCTCC 1803677 30 86.7 0 ......................ACA....A | T [1803703] ========== ====== ====== ====== ============================== ======================================== ================== 55 30 99.8 37 GTTACTAGCCTACCTATAAGGATTTGAAAC # Left flank : TTTACCAATCATGGTTTACCAATTGATATAAAAGAAACTCTAAAAATGTACTAGAAACTGAGCCCGGATATCCTTATGGATTTATAAAGTAACAGCCCTAAAAAGCTATCTAACATTTGCAATTACTGGATTCCTGAAAAGTTTGTTACTAAAAGAGAAAGGCCCGTCACCAAGCTGTTAAAATACAACGGCGGCGGGCCTTTTTAGTTATAAACACCCTTATTTAGTAATGTTTTTTCTCATTTTACTGCAAAACTATTTTCCCTACAAAACCCACAACTCTATTAAAATCAATACATCCCGTCATTTCCCACTTTAACCCTACTTATCCCATCTTTTGCAATTATTTATGAGAGACAACAGTAGTGCAAAAAACCCCGGGGATCGACGACAATTTAAAAAGGATAAACCGGCGTAATCAAAGGGTTGGGGAAAATAGCAATTTTGCAAATAGCAGGAGCCATTTTTTAACAACCCTTTTAATTAGCGGCTTCCGACGG # Right flank : ACCAAGAGGACGACAGAATGTGTAAAGAGTCTGCCGTCCTCTTGAGTTATTCCTTGGGTGGATAGGTCAGTTCAATGCGCCGAATGGTGTTCTGCTCCATTTCGGAAATGGTGAACTTCAGGTTTTTGTATTGGGCGGTCTGGCCTTTTTCCGGACGCCGGTGAGATTCCTCCAAAAACCAGCCGCCCAGGGTAAAGACGCCCTTGGCCTCCAGGTTTAAATCAAACTCCAGGTTGAAATCCGCAATGGGTATGCGGGCGTCCACGGAATATCTGCCTTGGCCCAGGGGTTCAATGAGCTGCCGCTCTTCATCGTATTCATCCTGAATTTCCCCCACAATCTCCTCTAAAATGTCTTCAATGGTCAAAAGACCGGCGGTGCCGCCGTACTCATCCTGCACAATGGCCAACTGCAGCCGGTTTTTTTGCATTTTCTTTAAAATCTGGTCGATGGGTGTCAGTTCGGTGGCGATCATGACTTTACGCAGGGATTGTTTAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGCCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 2490237-2491529 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2490237 30 100.0 37 .............................. TGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCG 2490304 30 100.0 36 .............................. AAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTAT 2490370 30 100.0 37 .............................. AGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTT 2490437 30 100.0 36 .............................. TACTTTTTTGCAATTTCCTTGATTTCTATTACCGAC 2490503 30 100.0 37 .............................. GGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGA 2490570 30 100.0 38 .............................. CCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGA 2490638 30 100.0 35 .............................. CGCATACTGCGAGAAGAAAAGAATCTAACCCTTGA 2490703 30 100.0 38 .............................. CCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAG 2490771 30 100.0 36 .............................. TAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGG 2490837 30 100.0 35 .............................. TTCCATTATCCCAATTAATATCATCCCATTTAAGA 2490902 30 100.0 36 .............................. TCTCACCCCCTCCATTTTCTTGAACACCGCCCCACA 2490968 30 100.0 36 .............................. ACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGT 2491034 30 100.0 36 .............................. CTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTT 2491100 30 100.0 36 .............................. ATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGG 2491166 30 100.0 36 .............................. TTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAA 2491232 30 100.0 36 .............................. CCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTG 2491298 30 100.0 37 .............................. GTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAA 2491365 30 100.0 36 .............................. AAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAA 2491431 30 100.0 37 .............................. TGAGGATCTAAAAGAACGACTGCAAATTTAGTCATTA 2491498 30 93.3 0 .........................C...A | TA [2491522] ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.7 36 GTTTTTAGCTTACCTATAAGGATTTGAAAC # Left flank : AAAGGCTTGGGTCGTATCTTATTAAATAAAGCAATTGACACAGCAAATATACGAAAAAAATCGTACATATGGCTTGGCGTCCGGGAAAGAAATGATAAAGCGATTTCATTTTATAAAAAGAATGGATTTTATGTAATTGGCAACCATCCCTTCTTTATGGGAGAAGAAGAACAAACAGATTTTATTATGCGAAAAGATCTATAATCCGATTAATATGCTTATTGATTGTTAAAGCTAAAATTTTTCTCTTTAGCTTTAAATAAAGATTATTTGTAAAAGGACTTTAAAATCTTTTGCAGAAAAAATTTAAAATGGTTTGGCAATGCAAATTAATCTGACCTCATTTTTGTCGTCGATCGTAGGTAGTGCAAAAAACCCGGGGGATCGACGACAATTTAAAAAGGATCAAACGGCATGTTTAAAGGGCTGGAAAAAATGAGGTGTTTAAAATGCCCTATAGCACTTTTATAATATGCCTTATATTTTGCCGACTCCGACGG # Right flank : ATTATCTTTAGCCTTCATTTCGTATATGCCAGATGATTATCTAACGAAAATACTTTCCATGGAGTTGAGAAAATGAAAAGAGCAACCCTATTATGGATTACTGTTTTTATTCTCTGTCTTACCCTTCAAGTAAAACCGGTTCTGGCGGAGACGGTAAAAGTCAGCCTGCCCGGCTTTCCGGTTGCTCTGAATGAAGTCACTGTGAACAATGATTACCGCCAGTATCCTCTCATCGTTTATAAAGATATTACCTATTTTCCCATGACCTATTATGACTGTCGTTTTCTGGGACTTGAAACCCATTGGTCCACTGAGAAAGGACTGGAGATCAAGAGTACCGGTATAACCGGCGGCTACCGGGATTATCTTGGAAAGGTCAAAAATAAGCAAACGGATACGGCGGTGAGGGCTGCCTTTCCTGTGACAATGAATGGCAAGGCCATAGAAAACAGCACGGAAGCCTACCCGTTGTTAACCTTCCGAAATGTAACCTATTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCTTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 3061058-3057773 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3061057 30 100.0 38 .............................. ATCGGATGTTGTCGTCGGTATAAGCCGACGACGATTAA 3060989 30 100.0 35 .............................. ATATGTAGAAAGACAACCGACGAATGTTTTAGCAC 3060924 30 100.0 37 .............................. TTACCAGTCTGCTTTATCTGCGGTGCAGAAGGCGGCC 3060857 30 100.0 37 .............................. AGGATATAGTCTTTCGGATTAAACATGAAGGCAACAA 3060790 30 100.0 37 .............................. CCGCATTGTAAGAACTGAAACCAGGGGAGAAAAGACT 3060723 30 100.0 35 .............................. TCCAGATGGAACAAAAGCCATACGCAACAACATTT 3060658 30 100.0 35 .............................. TGTACGGAATGACAGTGACATTCGACGCGTAGCAC 3060593 30 100.0 36 .............................. CGATGCCAAGATGACAGACAAAAACGCATCAAAGAA 3060527 30 100.0 37 .............................. ACCGTTTAGGTCGCACTGCAAGAATTATTCTAAATGG 3060460 30 100.0 37 .............................. TAAGCGTGTTTGATTACATTTGGGTCCTGCAGAGCAT 3060393 30 100.0 37 .............................. TGTGCTACGTCACAACGAACGCAGGGAAGAGAGGCTT 3060326 30 100.0 36 .............................. TCCAGATGGAACAAAAGCCATACGCAACAACATTTC 3060260 30 100.0 39 .............................. TGTGAATACGTGGGCTGGCATTGGTTTCCGGACTACATG 3060191 30 100.0 36 .............................. CCGCGATTCGGACTTGTTTCAGGGAGATGTCAAACT 3060125 30 100.0 40 .............................. GAGCCACCTATCTCGATCTCCTCCGCGCACTTGCGGCAGA 3060055 30 100.0 36 .............................. AAGTCAAGAAAACAAGCGGTGAAGGCAAGGAAAATC 3059989 30 100.0 35 .............................. CATCAAGAAAAAAAGACTTGAAAGAGATTTATCGC 3059924 30 100.0 36 .............................. TATTGTCTTCCTCGCCTAACCCAGGTAAAGATGAAA 3059858 30 100.0 36 .............................. CGTATACAAACTGGCGTTTTCTGCCCGTGGATGGAC 3059792 30 100.0 36 .............................. TCCCCTGCTTTGAGTTGTTTAAGTGCTTGTAGTTTA 3059726 30 100.0 36 .............................. TTCTACTGAAAATTTCAGTCCAAATTCTTTCATTCT 3059660 30 100.0 36 .............................. AATGATGATCGTTATATCCAAAGGCTTACTTTCCAT 3059594 30 100.0 37 .............................. TTGACAAAATCAGCCAATGGTTAAACGATAACGGACT 3059527 30 100.0 35 .............................. CACACTCTCGCAGCCTTGTGACTGCTATGTCGATC 3059462 30 100.0 35 .............................. CAAAATGATCCACTTGATCTAAGCAGCGTTCATAC 3059397 30 100.0 36 .............................. GGAGTCATTTGATTCATTTTTAAAAATATATCTTCT 3059331 30 100.0 36 .............................. TTAGTTAGTTCTATATGACTAATATTTGCGGTAATT 3059265 30 100.0 37 .............................. CTGGCTGCTGACCAGGGATTGGAGAAAGTCCGCAATA 3059198 30 100.0 36 .............................. TCTACAAGAGCATCAATAAGACGTTCTCCTGGCATT 3059132 30 100.0 35 .............................. CACAATAACGTGGTTGTGCGCATAGGTAATAATCA 3059067 30 100.0 38 .............................. GGGATGGTCAATGTCTATTTGACGGCCCGGTTTTCGAT 3058999 30 100.0 36 .............................. TCCGTCATATGTGTCATTTTCTTTGTCTACTGAGAC 3058933 30 100.0 36 .............................. AGCATCTCAATGTTTTCTTTGTCGGTGCGTTGGCAT 3058867 30 100.0 36 .............................. CCTGGGCAAAATGGGCAAGATTATCCTTAGTAGGAA 3058801 30 100.0 35 .............................. CAGGGGCGGATAACCGGATCCTATTTATCTCCAAC 3058736 30 100.0 35 .............................. ACGCAAAGGGTGGTTCGTGTCATGAGCCTATACGA 3058671 30 100.0 37 .............................. CATCCTCTATGGCGACGTTTACGGCATCCTTGCAGCC 3058604 30 100.0 34 .............................. GAGATTAAGCAACTGCTGAGCAAAACCAGTGTGG 3058540 30 100.0 37 .............................. TCCAAACTGCAGCCGCCGAAGCTGAAAGAAGAGTTTT 3058473 30 100.0 37 .............................. ATAATGCAACAACATCACCATATTTTTTAGTAATATC 3058406 30 100.0 37 .............................. ACGGACGGGTGGAAGTGACCAACTATGTGGAATGGGA 3058339 30 100.0 37 .............................. ATGGAACAGTGCAACAAGCTTGGGACGGTATCGTAAA 3058272 30 100.0 35 .............................. GTTGACTCTATTGTGGAAGCATGGAAGAACCTGAA 3058207 30 100.0 38 .............................. TTAAACCGAAAGGCCAAAGCCACATCAGGCGGATTAGG 3058139 30 100.0 37 .............................. CTCTAATACATCACCAGCATGAAACTCTGCTTCCTCG 3058072 30 100.0 38 .............................. GGAGGGAGAGATCGAGATTGACCTACTACTACAAGGTG 3058004 30 100.0 37 .............................. CCAATGTAGTTTTTAGGATCAAAAGCTGTGGCGTTAA 3057937 30 96.7 39 ........C..................... AAAACTACATCCCTGCTGGCATGATCGGGGACCAGAAAA 3057868 30 90.0 36 ........C..................G.T AACAAGAAGAACCGTCCGAAAAGGGCGGTTTTCTAT 3057802 30 76.7 0 ........CT...G.....AA...CA.... | ========== ====== ====== ====== ============================== ======================================== ================== 50 30 99.3 36 GTTACTAGTCTACCTATAAGGATTTGAAAC # Left flank : CCCGATGGTGACATTGGATAGGATGATCTGGAGGCAACAGGGGGTGAGGCCGAATGTTTGTTGTACTGGTCTATGATGTCAACCAAAAGAGAGTAAATAAGGTTCTCAAAAAATGCCGCCAGTACTTGAACTGGGTGCAGAATTCCGTTTTACAGGGGGAAATATCCGAAGCCAATCTTACGAAGCTTAAAATGGAACTGGAAAGAATCATTAATAAAGAGGAAGATTCGATCATCCTTTATAATTTGCGCACAACCAAATACTTCTTCCCTGAGATATTAGGCTTGCAAAAAGGCGGGGAAGGAAATATCCTTTAAATAGAATTTGAAAATTTTTTTAAGTAAATTTGTCGTCGATCGTAGGTAGTGCAAAAAACCCCGGGGATCGACGACAATTTAAAAAGATAAAACCCTTGGAATGAAAGGGATTTGAAAAATTAGGAAATTAAAAAGGACATGAAGCTATTTTTAACATGTCTTTAAATTAGCGGGTTCCGACGG # Right flank : TCCAAGGAATGCTGGGGTGTTAGGGAAAATATAAAATACATAAAGTTTTACAATTTACCATATTTTTTCCATAATTATTCCGAACTTTAATTCTACAATTGAAACATTAATTATAAAGGGGGATTTACAAATGTTTTAAGTAAGAAAAAATTACATTGATAAATATGGGTTTATTGTTAAGTTAGCTATGGTAGAAGCTTCTCGCAGGCGGCAGTAAAGATGATTTTAAGGATTTGCTCTGGTCAATAATATTGTCTTTTTTAGCCTACAAAAGGAGAATTTTCTTTAAAAAGACCGAGGTTATATGGGATTTAATAAAAAATAATTTAAGGAGTTAACTCATGAAGAAAAGAATGATTACATTATTACTGGCAGCGTCTATGGTAATGATGATGAGCGTTGCGGAAGCCAGTGAAACCACAAAACAAATCAGCATTACCGATCAGGATATCCAGATCTTGGTGAATAATAATGCGATTAGTCTGCAAGCTAATGAGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAGTCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 3091332-3093024 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3091332 30 100.0 35 .............................. GAGGGAGAACACAATGGACTGGAGCGGACAGAAAA 3091397 30 100.0 38 .............................. TCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGC 3091465 30 100.0 35 .............................. TCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCC 3091530 30 100.0 39 .............................. AGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGG 3091599 30 100.0 38 .............................. GCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCC 3091667 30 100.0 35 .............................. TTGCTTAAACTGGATGAAAAAACAGGGTCTATTGA 3091732 30 100.0 37 .............................. CAGATGTCATATCCGACTATGTCAGACCACCCAAAAC 3091799 30 100.0 37 .............................. CAGTCAAATCAAACTCCACCACATCATCAAACTTTCC 3091866 30 100.0 38 .............................. TTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGG 3091934 30 100.0 35 .............................. TCCGAGGCGGGAAGCTATATGGTACGTCAATCAGA 3091999 30 100.0 35 .............................. CTAGATCGTCCTCATCGTCTGTGGCATCAATTTCA 3092064 30 100.0 39 .............................. ATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTC 3092133 30 100.0 36 .............................. GTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTT 3092199 30 100.0 36 .............................. ATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCA 3092265 30 100.0 35 .............................. TACATGATTGGGATGATTATGCCGGAAAACTTATG 3092330 30 100.0 38 .............................. TCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAAC 3092398 30 100.0 37 .............................. TTGAAAGCTCTCTTAATACCTCAACAATACTCTTATT 3092465 30 100.0 36 .............................. ATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCT 3092531 30 100.0 39 .............................. TACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCAT 3092600 30 100.0 36 .............................. AGAAGTCTATCCCCATATTAAAGATGGATGAGGAAA 3092666 30 100.0 34 .............................. TTTCTTCTCGGCATCATCCATCCCTCCCTCGGAA 3092730 30 100.0 37 .............................. ACTTCTACCTCGACATTCACTACAATGCCGGGGTACT 3092797 30 100.0 35 .............................. TTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAA 3092862 30 100.0 38 .............................. AGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAAT 3092930 30 100.0 35 .............................. TGGTTTCAACCCTTGATGGTCGCTTCTTAAAAAAC 3092995 29 90.0 0 ...................-...G.A.... | G [3093022] ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.6 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : GTTTAGGTCCATTAAGATCGGGAGCCTGCTGGCCGGCCGGTGGCTTTTGAGTTTCCGGTGCGGCCAGGGCCGACGGCAGGCAAACTGTAAAGGCCAGTGATAAACAAAGTAAAATAAATACAGTGGATTTAATCCTCGGTTTCATTTTGTTTCCCCCTCTGGTTCTCTTTTCAACTCTCCTTTTATTTTTTGCTTTCAGGACTGATCTATGCTGAATAACCGAAGGGATTTTCTGGTAACCAAGATTAATCACTAAAAAAATAGATTTATAATAAAGGACTTTATAATATTATGCAGAAAAATTTTATTTAGCATTGAAAATGGAGTCATTATTTTCCTCCAAAATTTTGTCGTCGATCGGAGGTAGTGCAAAAATCCCCGGGGATCGACGACAATTTGAAAAAGTAGAGCCCTTATGGTTAAAGGGTTTTACAAAATCAGGGAACCCAATAGACATGTTCGCCATTTTAACATGTCTTTAAATTAGCCCCCTCCCACGG # Right flank : CATACCATAATGGAAACTGCTGTATCCCAGTAAAATCAAAAGCCTAGCTCTGTAAAAACTTTGCTCTAATTTGTTTTTGGGGACAAATTGGGGACCGCCGCAAAGTAATAATCCCCGGCAACTCTAATGAGTGCCGGGGATTTTACAATTTTACCATTATCAATAAAAAGGAGCGGATGAAAGTTGAATGAAATAACAGGACAACTTAGATCAATTTGGGTCGTCCTCTTTAGGAATATTAATTTTAATCGGTTCATTAAACAAATTATTGAGAACTTGCCGCTCAGTTAGCTCGGTTATCTGATCTTGAAACCGTTCGTGATCTATAGTGGCGTCGATCGAATTAATAACATCTTGTGCGGTTTCTGCATTCTCCCACATCTCATCAACCAATTGTTCGTCTTCCTTAACTAGATCACCATAATGAACAGCATAAACAGTTTGAGTGGCATCATCCCATTTTACTGTAAATGCTAAATTTTTTAAGACGACACTAATTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 10 3099787-3101765 **** Predicted by CRISPRDetect 2.4 *** >NC_015589.1 Desulfotomaculum ruminis DSM 2154, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 3099787 30 100.0 37 .............................. TGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATG 3099854 30 100.0 39 .............................. CGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCA 3099923 30 100.0 40 .............................. TAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTG 3099993 30 100.0 35 .............................. TTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGC 3100058 30 100.0 38 .............................. TGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCA 3100126 30 100.0 38 .............................. ATATAAATATATCATGATATATCATGATATGTCAATAC 3100194 30 100.0 35 .............................. AAAAGATACTGAATTCTTTCATAAGGTTCATTACC 3100259 30 100.0 34 .............................. TCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAG 3100323 30 100.0 38 .............................. TCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTA 3100391 30 100.0 36 .............................. CCCCAAGGTATAGGGGGTATAAATATAGTAGATACC 3100457 30 100.0 37 .............................. AACTGTCTGGCTTGATAATCCAACTTCATCGCCAATA 3100524 30 100.0 35 .............................. TCGGTATTGAGTTATGCGACCCCACAACCTTCCAA 3100589 30 100.0 38 .............................. ATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCA 3100657 30 100.0 39 .............................. TGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCA 3100726 30 100.0 39 .............................. CTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGC 3100795 30 100.0 43 .............................. TATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTAT 3100868 30 100.0 36 .............................. TACATCATTTTATCCCTCTTTCTATTTTTCTTTTTC 3100934 30 100.0 39 .............................. ACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGA 3101003 30 100.0 36 .............................. TATTTTAAAGCGCTTTTATCATCACCTACTGGTGTA 3101069 30 100.0 37 .............................. CCCCGGCACAATTTGAAAACCTATTCCCCATACAGAA 3101136 30 100.0 38 .............................. CTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAAT 3101204 30 100.0 34 .............................. ATAAATGGCATAGTGACAACACTAATACAGATAG 3101268 30 100.0 37 .............................. CCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTG 3101335 30 100.0 37 .............................. ACCCCGATACAGACGATGAATCTTCGGCTTGCGACTG 3101402 30 100.0 38 .............................. GTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTC 3101470 30 100.0 36 .............................. TTACTGATGATTGCTTACTTTCTTTATTTACAAGCA 3101536 30 100.0 37 .............................. TTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCA 3101603 30 100.0 37 .............................. GAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTAT 3101670 30 96.7 36 .....C........................ TATTATCCTTACTTCCCCCTTCTCCATTTGTTTATA 3101736 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 30 30 99.9 37 GTTTCTAGCTTACCTATAAGGATTTGAAAC # Left flank : ACATTTTTCAATTGAAGGTTTCGGGAAATGTATGCTCTATATTTATAATGATGTTGATAAATACATTGTTCTGAAGTTGGAGGGCGATGATCCGGGTTATGTGATTGTTAATGATAAATCCCAGGATAAAACGGAGCAGCTATATCAAACCATCAAGCAATGGCTAGAGGAATGAGCCTTACTATTGAAAATTAGCAATAAGGGGTCAGCCCTCCGTCCTGATAAAAATTAATTTTGGATAGAGGATTTTTAAATATTAAGAAGAAGGAATTTACAAATATCTACTGAATAAGGGATTGATCACTTTTATTTCCCCTTTACATTTGCAAATTTTCGTTGGTTTAAATTGTCGTCGATCGCAGGTAGTGCAAAAACCCCCGGGGATCGACGACAATTTAAAAACATAAAACCCTTGGAATGAAAGGGTTTTGAAAAATCAGGAAGCAAAAGCGGACATGAATCTATTTTTAACATGTCTTATATTTAGCGGGCTGCGACGG # Right flank : CGCAGTTAAGGGGGAAAGGGTTCCTCCGGCCGTCACCGGCGTTTCTAGCTTGAGGATCATACCCGGAACTACTGCACCCAGTAAAATCTAGTTTCAACTATGATTTACCTGCCCTAACCCTTTGGTTGATTGGGCACCGTTTTTAAAACGATTTAAAATGAATAAAGCCCCGGCATTGCCGGGGCTAACATTTTGTAGTTATTTGATTTATATGTTGACATAAAGGACCATTCGTTGTATCAACTTCCCTAACAATTGAGATAGCCCCTGCTAATGTTAGCATGGGGCTTAAATATTTGCACTATATCAGGATGCCGAATAACCCGCCGAAATTTCAGCTATTCAAATTGGAAAACAGAGCTGCCGGACACTTTGCCCAGTAAAATATTACCCTGGGCAGGGGGGGCGCCGTTGATGGTAAAGGCTTGTTGAATCATCTGTTCCACGGCAGTCAAATCCATATCCTTTTGGGCATGAAGATCTGCCAGGGTTTCCCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCTTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //