Array 1 75234-75392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWK010000005.1 Listeria innocua strain FSL L7-0796 NODE_5_length_276020_cov_30.533828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 75234 29 100.0 36 ............................. TTTGTTTTAGTAAGCATATCTCGAATAAATTCAAGT 75299 29 100.0 36 ............................. AACTGATATGCGTTATCTACTGTTTGTGTTTTTAAG 75364 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 98.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGAGACCGACAGAAATTTGTGAATGCTTGGAGGAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAAGTCGACAGAAACAGCCTTTTGAGGTAAGGTGGGAGTAAGAAGAAAAGCGCACGG # Right flank : TGTAGGAAGCGGCTTTAAAGAAATTACTAAATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCGAACAGTGATTCGATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAATACGATTAGTGAAGTAGAGATTTTGAAAAACTATAAAGGCAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAATTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGGTGACGATAAAGTAAGTTCTATAGTTAGCATGGGTTATGGTAAATTCAGTGAAAAACTCCAAGAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 90327-91394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWK010000005.1 Listeria innocua strain FSL L7-0796 NODE_5_length_276020_cov_30.533828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 90327 29 100.0 36 ............................. AACAGTTCATCCATAACGGCTCTTAACTGCTTATTT 90392 29 100.0 36 ............................. AAAATCAAACTAACACTTAATAAAAAAGAGGATTCT 90457 29 100.0 36 ............................. CAAGACGTAACATTCACTTCATCTGATGAATCAAAA 90522 29 100.0 36 ............................. ACTGTTAGGCCATGTTTTGTAGCAATTCCTGCTAAT 90587 29 100.0 34 ............................. AAAACCTTGTATAAACCGTAAGCAGCTAAACCGA 90650 29 100.0 36 ............................. ACTGCAGAAGGGACGACTGGTTTTTATTGCGAAGGG 90715 29 100.0 36 ............................. TGAAAAAGTGAAAGCATATTTAGAAGAAAATAAAGA 90780 29 100.0 36 ............................. AATCAAAATGATATTGAAATGCGTTGCACTTTAGCC 90845 29 100.0 36 ............................. TCTTCAGCAAAATGTTGAATGTCAAACTTGCGCTGT 90910 29 100.0 36 ............................. AATCAAAATGATATTGAAATGCGTTGCACTTTAGCC 90975 29 100.0 37 ............................. ATAACCCTTTTACTATTGCTTTTAATAAATCCCATCC 91041 29 100.0 37 ............................. TTCAGAGACATTTCTTAAAGCTTTTGAAAGAACTTCC 91107 29 96.6 34 A............................ AAACTTTGAGTTAACAACCCATTACGCCCAACAA 91170 29 100.0 35 ............................. GAAATACCTTCGATAAAGTCGCATTCGTATACATT 91234 29 96.6 37 ...................C......... ACTGGTTACAACATCGATAAAACGATTTATCCAGTAA 91300 29 100.0 36 ............................. CTGAATCAGCAACTGGAACAGTATCTAAAACATTTG 91365 29 93.1 0 .......................A....C | C [91388] ========== ====== ====== ====== ============================= ===================================== ================== 17 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : GCATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTGTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACACAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACGGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCAGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 17752-19348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWK010000013.1 Listeria innocua strain FSL L7-0796 NODE_13_length_26861_cov_55.573290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 17752 36 100.0 30 .................................... GAACAAACATTCGATAAATATTATGATGAA 17818 36 100.0 30 .................................... GAATGGCAAAAAAGCAAACAGCGAATCTAG 17884 36 100.0 31 .................................... AGCAATACATTTCTTTCTCCAAAATCGCCCT 17951 36 100.0 30 .................................... CTTAAAGTTATTTGCATTGCTGATAAATGC 18017 36 100.0 30 .................................... AAACGTTACTTATTTATATGGTCCGAATTC 18083 36 100.0 30 .................................... TTATGTCTTTAAAGACAAGTAACTTTCGTG 18149 36 100.0 29 .................................... GATAGTGACCCCAACACCACCAACACTAC 18214 36 100.0 29 .................................... TTCAATGCGTTTGTTGTTTCTGCCTCTAT 18279 36 100.0 30 .................................... TGGCAACTTGCCCCAGATAGGGGGTGTTTT 18345 36 100.0 30 .................................... TGTTCTTTCGAATACTAACAAATCATCCAT 18411 36 100.0 30 .................................... AAGATTGTTCAAACATGTACCAGTCGGTGA 18477 36 100.0 30 .................................... TTTAATGGTGATGATAGAGAAGTTGTTTTA 18543 36 100.0 30 .................................... AACAGTCCATACATTGAAAGAGAAGCAAAT 18609 36 100.0 30 .................................... AATAACCGGAAAAGGCTTTCCCACCACAAT 18675 36 100.0 30 .................................... TAGAACGCGTAAATATGTTGATGGATAAAA 18741 36 100.0 30 .................................... AAAATTTTGTTACATTTTTTATAGATGGTT 18807 36 97.2 35 ...................................T GAAAAGAAGAGTTGGATGTTTCACTTGATGTTATT 18878 36 83.3 28 .......G..........T........A.GAC.... TACCTTTAAAGGCTTCGATGATTAAAGC G [18900] 18943 36 86.1 29 ........A......A..T......A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 19008 36 86.1 28 ................T.T..........G....TT TTATTCAGCACCAGGATTAGAAAGGCAC TAT [19024] 19075 36 88.9 33 ..............C...T......A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTG 19144 36 63.9 67 A...........A.....TC.A.CA.TC...T.TTT ATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG A [19171] 19248 36 91.7 29 .........T....C...T................. TACTAATTTGAAATCTATTGTGGAGTGTT 19313 36 80.6 0 ..............C...T......A...GT..GG. | ========== ====== ====== ====== ==================================== =================================================================== ================== 24 36 94.9 32 GTTTTAGAGCTATGTTATCTTGAATGCTACCAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAATGGAATGTAAGTATCCAAATGTTCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGGATCTTGGAGGATAGAAAAATTCTGCGAG # Right flank : CTAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAAACAACAGAAATCCTAGGAAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAATAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATCTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-60] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //