Array 1 229556-231854 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSPW01000001.1 Listeria monocytogenes strain CFSAN026581 CFSAN026581_contig0000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 229556 29 100.0 38 ............................. TCTTGCTATCTGTATATGCTTTAGCAGAGTTTAATGCA 229623 29 100.0 36 ............................. GGGGCAGTTAATGCTTGGAATTGCTCAATAGTTAGC 229688 29 100.0 35 ............................. AAAATTTAGAGTTGATATTTACAAATGATGTAAAC 229752 29 100.0 37 ............................. AGCCCTTTGCAGAAATTCTGGATTAAAAAATTAACCA 229818 29 100.0 34 ............................. GCGGCTCTGTTCTCTTTGCTCACATAATTTTTTA 229881 29 100.0 36 ............................. TCAAGTAAAGGCGGTATCATTCCGTTACTAAATTCA 229946 29 100.0 35 ............................. ATTGATACAGAATGATTCAATTGAATATCATTTGT 230010 29 100.0 34 ............................. TTTCTTAAATTGAATGTCATCGTTTCTAATCCGC 230073 29 100.0 34 ............................. ATTTAAAATGTTAATCTTTACAGCGGATACTCCG 230136 29 100.0 34 ............................. CTATCTCCGAACCCCACTTGTGTTTGAACTTTAG 230199 29 100.0 35 ............................. AAATGCCTCCGCTAGCAGCTTTTAAGCCGACATTC 230263 29 100.0 41 ............................. TCTATCAATAAAGTAGTACAAGTAACAGTGGAAGCAGCAGA 230333 29 100.0 37 ............................. TTCTTTTAACGAACTACTATCATGCTGAACTTGTTTT 230399 29 100.0 36 ............................. ATAACCGAATATAGTAGTAATCGTTTTCGGATGGGA 230464 29 100.0 36 ............................. ATGTGCTAAGTTCTTAGGTATTAATCAGCAAAAGGA 230529 29 100.0 34 ............................. TTCGACCAATAAGTTTTCGCGCTTGTGCATCGTC 230592 29 100.0 37 ............................. AGCCTTCTGATACGAAAACAACACGATTTTGCGGATA 230658 29 100.0 35 ............................. TTTGTCTGATGCTCATTGATCTATTTCTCAACTTT 230722 29 100.0 35 ............................. TTTGTCTGATGCTCATTGATCTATTTCTCAACTTT 230786 29 100.0 36 ............................. ATTGCAGTGAAATATCTCTCTTGAATCCCTAGGCTT 230851 29 100.0 34 ............................. ATACAAATGAGGATTTTAGATATAAAATTGCTTG 230914 29 100.0 37 ............................. GAAGATATTGCTAAAAGAAATAACATTCTTCGTGAAC 230980 29 100.0 36 ............................. TTGGTTCGCATTAGTATGGAAATCAATCCTAACTTT 231045 29 100.0 35 ............................. TCAAAATCCCGATAACAGCTACTACTGTTGTAACA 231109 29 100.0 36 ............................. CAGGAAAAAGCGTTGGAGAAATGAAAAAATATGTTT 231174 29 100.0 36 ............................. TTCAAAACGATTCAAAAAGCTGTAAATATGGTTCCG 231239 29 100.0 37 ............................. AAAAAGAATTTGTTACAGATGCAGGGTGGGGTAAAAG 231305 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 231371 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 231435 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 231500 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 231566 29 100.0 35 ............................. TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT 231630 29 100.0 36 ............................. CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA 231695 29 100.0 35 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGT 231759 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 231825 29 93.1 0 .......................A....C | C [231848] ========== ====== ====== ====== ============================= ========================================= ================== 36 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //