Array 1 943209-944823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051404.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 20762 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 943209 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 943270 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 943331 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 943392 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 943453 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 943514 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 943575 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943636 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943697 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943758 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943819 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943880 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943941 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 944002 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 944063 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 944124 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 944185 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 944246 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 944308 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 944369 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 944430 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 944491 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 944552 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 944613 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 944674 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 944735 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944796 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960956-962432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051404.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 20762 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960956 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 961017 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 961079 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 961140 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 961201 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 961262 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 961323 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 961384 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 961445 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 961506 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 961567 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 961628 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 961689 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 961751 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961854 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961915 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961976 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 962037 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 962098 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 962159 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 962220 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 962281 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 962342 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 962403 29 96.6 0 A............................ | A [962429] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //