Array 1 309-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHQ01000057.1 Lactobacillus acidophilus strain DS2_1A DS2_1A_107_length_346_cov_63.388128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 308 28 100.0 33 ............................ CCAAGATATAATTAAAAGAAAATATCGTAGTCA 247 28 100.0 33 ............................ TTTGATTTGAGTTAAGTACCGGTGCATCAATGA 186 28 100.0 33 ............................ TCTTTAATGTGACCAAAAGCGCTCGTAGCAGCA 125 28 100.0 33 ............................ GGACGCAAAAGGGCAGAAAGCTAATTTATGACG 64 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : AAAATTATTTTCTGGTGTGAAAAATGCTGATGATATT # Right flank : CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 48316-47495 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHQ01000008.1 Lactobacillus acidophilus strain DS2_1A DS2_1A_8_length_59496_cov_45.752969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48315 28 100.0 33 ............................ AAGAGAAAACGGTGGTTTCCTCTTATTTTTATG 48254 28 100.0 33 ............................ AAATCCGGACAACGCTTGCCACCTACGTATTAG 48193 28 100.0 33 ............................ TAGGCGAAACCCCGAGAGCAATTTCAAGCACGA 48132 28 100.0 33 ............................ AAAACGTTGAAGCTTATTGTCCGCTTTAACGTA 48071 28 100.0 33 ............................ GTTTACAACATCATGGTTAGAGCAAAACTTGTA 48010 28 100.0 33 ............................ GGGTACCGAGGGTGGCAATATCTTCCTTATTTA 47949 28 100.0 33 ............................ ATATACATAGTTGTTTGTTTCAAAAATTGCCGA 47888 28 96.4 33 ...........................C GGAATGTATGATAAAAATTGGCTATTTGCCTAA 47827 28 100.0 33 ............................ ATTGATGCAACACCTAGCGCAAGTCAACCTGGA 47766 28 96.4 33 ...........................C AGGGTGGTTTTAAGTACGAGATTGACTACGATA 47705 28 100.0 33 ............................ GGCGAGAAGCTTATGAAGATCCTAGGAAAAGGA 47644 28 100.0 33 ............................ ATATGCGACTTATTTCTTACGATGAGATTCCAA 47583 28 92.9 33 ...........A.A.............. CGATGGTAACTCTGTAGCTTTTAGAGCCTTTTA 47522 28 75.0 0 ....T..T.T.A.A........A.C... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 33 TTTTCTCCACGTATGTGGAGGTGATCCT # Left flank : CGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGTG # Right flank : GAAGCACAATATTTTTAAAATAATTGGGCAAGATTTTCTCCAAAAAAGTGGAGCTACATTAACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1226-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHQ01000045.1 Lactobacillus acidophilus strain DS2_1A DS2_1A_45_length_1264_cov_64.723835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 1225 27 100.0 34 ........................... TCGTGCTTGAAATTGCTCTCGGGGTTTCGCCTAA 1164 27 100.0 34 ........................... TATTTGCTGCGAGTAACTCTGACTTGTTTACCCG 1103 27 100.0 34 ........................... TTTTAGCTAAGTTTAAGACCGAAGATGGCCAAAG 1042 27 100.0 34 ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 981 27 100.0 34 ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 920 27 100.0 34 ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 859 27 100.0 35 ........................... TAGCTATCCAAATATTAAATTTGCACTAGTTAAGG 797 27 100.0 34 ........................... TGAAGAATTTTATCTTCTAGGTGGCTTTTTTGTG 736 27 100.0 34 ........................... TAGAAATATTTGATTTTGATAGTGAAAAAGAATA 675 27 100.0 34 ........................... TTCAAGATCAACCATTCATTTGCCACGCAAATCG 614 27 100.0 34 ........................... TTATTTTCTGGTGTGAAAAATGCTGATGATATTG 553 27 100.0 34 ........................... CCCAAGATATAATTAAAAGAAAATATCGTAGTCA 492 27 100.0 34 ........................... CGGACGCAAAAGGGCAGAAAGCTAATTTATGACG 431 27 100.0 34 ........................... CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCA 370 27 96.3 34 ............T.............. CCCACGCCACATATTGTGTGCGGAATAGCCTAAG 309 27 100.0 34 ........................... CTCTGCCAAAATAGTAGCCGAATCTGGAAAATCA 248 27 100.0 34 ........................... CAAAGTGTCACAAAACTAGCACCTTTCATTAAAA 187 27 100.0 34 ........................... CAGAGTTTAGTCGTCGCAATGTGTGTCTCAATGA 126 27 100.0 34 ........................... CTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 65 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =================================== ================== 20 27 99.8 34 GGATCACCTCCACATACGTGGAGAAAA # Left flank : GAAAATACGTTAAAGCGGACAATAAGCTTCAACGTTTT # Right flank : ACATAAAAATAAGAGGAAACCACCGTTTTCTCTTAGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //